Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI79_RS06115 Genome accession   NZ_CP139266
Coordinates   1283957..1284283 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain HUM14     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1278957..1289283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS06095 (SOI79_06095) - 1279064..1279690 (-) 627 WP_057070670.1 FHA domain-containing protein -
  SOI79_RS06100 (SOI79_06100) gspD 1279731..1282001 (-) 2271 WP_014208195.1 type II secretion system secretin GspD -
  SOI79_RS06105 (SOI79_06105) - 1282043..1282879 (-) 837 WP_284088148.1 type II secretion system protein N -
  SOI79_RS06110 (SOI79_06110) gspN 1282879..1283622 (-) 744 WP_002121195.1 type II secretion system protein N -
  SOI79_RS06115 (SOI79_06115) hns 1283957..1284283 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI79_RS06120 (SOI79_06120) - 1284478..1284918 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI79_RS06125 (SOI79_06125) - 1284926..1286119 (-) 1194 WP_005065771.1 hypothetical protein -
  SOI79_RS06130 (SOI79_06130) - 1286129..1286971 (-) 843 WP_032063108.1 hypothetical protein -
  SOI79_RS06135 (SOI79_06135) hemD 1286980..1287747 (-) 768 WP_005065765.1 uroporphyrinogen-III synthase -
  SOI79_RS06140 (SOI79_06140) hemC 1287751..1288668 (-) 918 WP_031945258.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908516 SOI79_RS06115 WP_000801427.1 1283957..1284283(-) (hns) [Acinetobacter pittii strain HUM14]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908516 SOI79_RS06115 WP_000801427.1 1283957..1284283(-) (hns) [Acinetobacter pittii strain HUM14]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1