Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI73_RS14165 Genome accession   NZ_CP139262
Coordinates   2972800..2973126 (-) Length   108 a.a.
NCBI ID   WP_002121134.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967800..2978126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS14145 (SOI73_14145) - 2967901..2968527 (-) 627 WP_002121153.1 FHA domain-containing protein -
  SOI73_RS14150 (SOI73_14150) gspD 2968568..2970844 (-) 2277 WP_002121232.1 type II secretion system secretin GspD -
  SOI73_RS14155 (SOI73_14155) - 2970886..2971722 (-) 837 WP_002121214.1 type II secretion system protein N -
  SOI73_RS14160 (SOI73_14160) gspN 2971722..2972465 (-) 744 WP_002121195.1 type II secretion system protein N -
  SOI73_RS14165 (SOI73_14165) hns 2972800..2973126 (-) 327 WP_002121134.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI73_RS14170 (SOI73_14170) - 2973321..2973761 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI73_RS14175 (SOI73_14175) - 2973769..2974962 (-) 1194 WP_002121267.1 hypothetical protein -
  SOI73_RS14180 (SOI73_14180) - 2974972..2975814 (-) 843 WP_002121187.1 hypothetical protein -
  SOI73_RS14185 (SOI73_14185) hemD 2975823..2976590 (-) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  SOI73_RS14190 (SOI73_14190) hemC 2976594..2977511 (-) 918 WP_057082133.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=908475 SOI73_RS14165 WP_002121134.1 2972800..2973126(-) (hns) [Acinetobacter pittii strain HUM1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGTQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908475 SOI73_RS14165 WP_002121134.1 2972800..2973126(-) (hns) [Acinetobacter pittii strain HUM1]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTACTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991