Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI70_RS15380 Genome accession   NZ_CP139258
Coordinates   3207223..3207549 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain HUM3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3202223..3212549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS15360 (SOI70_15380) - 3202324..3202950 (-) 627 WP_005079408.1 FHA domain-containing protein -
  SOI70_RS15365 (SOI70_15385) gspD 3202991..3205267 (-) 2277 WP_005079410.1 type II secretion system secretin GspD -
  SOI70_RS15370 (SOI70_15390) - 3205309..3206145 (-) 837 WP_005079413.1 type II secretion system protein N -
  SOI70_RS15375 (SOI70_15395) gspN 3206145..3206888 (-) 744 WP_002121195.1 type II secretion system protein N -
  SOI70_RS15380 (SOI70_15400) hns 3207223..3207549 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI70_RS15385 (SOI70_15405) - 3207744..3208184 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI70_RS15390 (SOI70_15410) - 3208192..3209385 (-) 1194 WP_005079417.1 hypothetical protein -
  SOI70_RS15395 (SOI70_15415) - 3209395..3210237 (-) 843 WP_002121187.1 hypothetical protein -
  SOI70_RS15400 (SOI70_15420) hemD 3210246..3211013 (-) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  SOI70_RS15405 (SOI70_15425) hemC 3211017..3211934 (-) 918 WP_057082133.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908446 SOI70_RS15380 WP_000801427.1 3207223..3207549(-) (hns) [Acinetobacter pittii strain HUM3]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908446 SOI70_RS15380 WP_000801427.1 3207223..3207549(-) (hns) [Acinetobacter pittii strain HUM3]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1