Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI70_RS08370 Genome accession   NZ_CP139258
Coordinates   1738729..1739109 (-) Length   126 a.a.
NCBI ID   WP_005069533.1    Uniprot ID   A0A022IXP4
Organism   Acinetobacter pittii strain HUM3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1733729..1744109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS08340 (SOI70_08355) tadA 1733793..1734296 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI70_RS08345 (SOI70_08360) hibch 1734302..1735426 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  SOI70_RS08350 (SOI70_08365) ung 1735423..1736136 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  SOI70_RS08355 (SOI70_08370) - 1736190..1736786 (-) 597 WP_002121363.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI70_RS08360 (SOI70_08375) gspK 1737014..1737973 (-) 960 WP_005076277.1 type II secretion system minor pseudopilin GspK -
  SOI70_RS08365 (SOI70_08380) xcpW 1737974..1738729 (-) 756 WP_005069530.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI70_RS08370 (SOI70_08385) xcpV 1738729..1739109 (-) 381 WP_005069533.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI70_RS08375 (SOI70_08390) - 1739099..1739653 (-) 555 WP_005069534.1 type II secretion system protein -
  SOI70_RS08380 (SOI70_08395) - 1739660..1740268 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  SOI70_RS08385 (SOI70_08400) ycfH 1740305..1741078 (-) 774 WP_005069538.1 TatD family hydrolase -
  SOI70_RS08390 (SOI70_08405) pilZ 1741096..1741437 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI70_RS08395 (SOI70_08410) holB 1741448..1742428 (-) 981 WP_002121362.1 DNA polymerase III subunit delta' -
  SOI70_RS08400 (SOI70_08415) kdsB 1742442..1743203 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13934.09 Da        Isoelectric Point: 9.4463

>NTDB_id=908430 SOI70_RS08370 WP_005069533.1 1738729..1739109(-) (xcpV) [Acinetobacter pittii strain HUM3]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908430 SOI70_RS08370 WP_005069533.1 1738729..1739109(-) (xcpV) [Acinetobacter pittii strain HUM3]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCAATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTGCGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A022IXP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944