Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SOI71_RS02475 Genome accession   NZ_CP139251
Coordinates   505517..506401 (+) Length   294 a.a.
NCBI ID   WP_104075304.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500517..511401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS02450 (SOI71_02450) - 500831..502078 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  SOI71_RS02455 (SOI71_02455) wrbA 502439..503041 (+) 603 WP_079381004.1 NAD(P)H:quinone oxidoreductase -
  SOI71_RS02460 (SOI71_02460) xpt 503093..503668 (-) 576 WP_104075305.1 xanthine phosphoribosyltransferase -
  SOI71_RS02465 (SOI71_02465) - 503741..504454 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  SOI71_RS02470 (SOI71_02470) - 504613..505284 (-) 672 WP_014207723.1 hypothetical protein -
  SOI71_RS02475 (SOI71_02475) tonB2 505517..506401 (+) 885 WP_104075304.1 energy transducer TonB Machinery gene
  SOI71_RS02480 (SOI71_02480) ybeY 506453..506929 (-) 477 WP_002119528.1 rRNA maturation RNase YbeY -
  SOI71_RS02485 (SOI71_02485) phoL 506939..508027 (-) 1089 WP_002119513.1 PhoH family protein -
  SOI71_RS02490 (SOI71_02490) miaB 508065..509516 (-) 1452 WP_068615284.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33545.02 Da        Isoelectric Point: 7.5173

>NTDB_id=908328 SOI71_RS02475 WP_104075304.1 505517..506401(+) (tonB2) [Acinetobacter pittii strain MCR53]
MLNNRSRSIEPFHCWWQDRVFIAATILAILLHVFVLLIHFAMPSPSEQSTKEIAISIRPGNEPVNQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGSSELETLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=908328 SOI71_RS02475 WP_104075304.1 505517..506401(+) (tonB2) [Acinetobacter pittii strain MCR53]
ATGCTGAACAACAGAAGTCGATCCATAGAGCCTTTTCATTGTTGGTGGCAAGACCGAGTCTTTATAGCTGCAACAATATT
GGCAATCTTACTGCATGTTTTTGTGTTGCTTATCCACTTTGCCATGCCTAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGACCAGGCAATGAGCCAGTTAATCAGGCAGATTTTTTGGCTCAAGCAGACCAGCAGGGTTCAGGTGCA
TTTCGTGAGGCTCACCGGACTTCTAGTGATACTCCAAATCCCATGCTTAATGATGCTTCAACTGGAAGCTCAGAGTTAGA
AACTTTACAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCTATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881