Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI76_RS15435 Genome accession   NZ_CP139249
Coordinates   3218582..3218986 (-) Length   134 a.a.
NCBI ID   WP_104080754.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3213582..3223986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS15405 (SOI76_15405) - 3213663..3213932 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI76_RS15410 (SOI76_15410) rapZ 3213929..3214780 (-) 852 WP_005066272.1 RNase adapter RapZ -
  SOI76_RS15415 (SOI76_15415) panC 3214807..3215652 (-) 846 WP_057075656.1 pantoate--beta-alanine ligase -
  SOI76_RS15420 (SOI76_15420) panB 3215656..3216465 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI76_RS15425 (SOI76_15425) folK 3216511..3216993 (-) 483 WP_057075659.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI76_RS15430 (SOI76_15430) pcnB 3216990..3218456 (-) 1467 WP_104080753.1 polynucleotide adenylyltransferase PcnB -
  SOI76_RS15435 (SOI76_15435) comEA 3218582..3218986 (-) 405 WP_104080754.1 ComEA family DNA-binding protein Machinery gene
  SOI76_RS15440 (SOI76_15440) mazG 3218955..3219761 (-) 807 WP_104080755.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI76_RS15445 (SOI76_15445) - 3219874..3220647 (+) 774 WP_104080756.1 SDR family oxidoreductase -
  SOI76_RS15450 (SOI76_15450) relA 3220695..3223001 (-) 2307 WP_104080757.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15437.77 Da        Isoelectric Point: 10.4462

>NTDB_id=908301 SOI76_RS15435 WP_104080754.1 3218582..3218986(-) (comEA) [Acinetobacter pittii strain MCR8900]
MQLSMNLWKNKHYIFIVLFWSLISSTLVQAQSFDQNFKEWKAKQQMYDQKLSMQYASHSNVSKSSAMTDSSGQIRLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908301 SOI76_RS15435 WP_104080754.1 3218582..3218986(-) (comEA) [Acinetobacter pittii strain MCR8900]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTCATTGTTTTATTTTGGAGCCTGATCTCATCAACACT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAGCAACAGATGTATGATCAGAAGTTGAGCATGC
AATATGCCTCTCATTCTAATGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGACAAATTCGCTTGAATCAAGCCAAT
ATTGATGAGCTTCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCACAAGCGATTGTAGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAGCACGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.883

100

0.694
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403