Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SOI76_RS02445 Genome accession   NZ_CP139249
Coordinates   505902..506786 (+) Length   294 a.a.
NCBI ID   WP_104079824.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500902..511786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS02420 (SOI76_02420) - 501217..502464 (-) 1248 WP_104079820.1 YihY family inner membrane protein -
  SOI76_RS02425 (SOI76_02425) wrbA 502823..503425 (+) 603 WP_205668423.1 NAD(P)H:quinone oxidoreductase -
  SOI76_RS02430 (SOI76_02430) xpt 503477..504052 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  SOI76_RS02435 (SOI76_02435) - 504125..504838 (-) 714 WP_104079822.1 DUF3108 domain-containing protein -
  SOI76_RS02440 (SOI76_02440) - 504998..505669 (-) 672 WP_104079823.1 hypothetical protein -
  SOI76_RS02445 (SOI76_02445) tonB2 505902..506786 (+) 885 WP_104079824.1 energy transducer TonB Machinery gene
  SOI76_RS02450 (SOI76_02450) ybeY 506888..507370 (-) 483 WP_104079825.1 rRNA maturation RNase YbeY -
  SOI76_RS02455 (SOI76_02455) phoL 507380..508468 (-) 1089 WP_002119513.1 PhoH family protein -
  SOI76_RS02460 (SOI76_02460) miaB 508506..509957 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33615.16 Da        Isoelectric Point: 8.1046

>NTDB_id=908286 SOI76_RS02445 WP_104079824.1 505902..506786(+) (tonB2) [Acinetobacter pittii strain MCR8900]
MLNNRSRSIEPFHCWWQDRVFIAATILAILLHVFVLLIHFAMPSPSEQSTKEIAISIRPGNEPVNQADFLAQADQQGSGV
FREAHRISSDTPNPMLNDASTGSSELETLQKVQQQRELKFEEKVLMTVLSWQKQADTSQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEIH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=908286 SOI76_RS02445 WP_104079824.1 505902..506786(+) (tonB2) [Acinetobacter pittii strain MCR8900]
ATGCTGAACAACAGAAGTCGATCCATAGAGCCTTTTCATTGTTGGTGGCAAGACCGAGTCTTTATAGCTGCAACAATATT
GGCAATCTTACTGCATGTTTTTGTGTTGCTCATCCACTTTGCCATGCCTAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGACCAGGCAATGAGCCAGTTAATCAGGCAGATTTTTTGGCTCAAGCAGACCAGCAGGGTTCAGGTGTA
TTTCGTGAGGCTCACCGGATTTCTAGTGATACTCCAAATCCCATGCTTAATGATGCTTCAACTGGAAGCTCAGAGTTAGA
AACTTTACAAAAGGTTCAGCAACAAAGAGAACTGAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAAAAAC
AAGCTGATACAAGTCAAAGGAAGAAAGAATTAGAACAATTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCCAGC
CTTGAAGCACAATATTTACAACGCAGGCAAGATTTCAGCCGCCAGCAAAAAATAAAGACAGTAGACGGAATTCAAGCGAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTGGAGCTTTACGGTAACCGCTATTACCCAGAAGAAG
CCAAACAGCAACAACTAAGAGGTGAGGTCCGTTTAATGGTGATTTTGAATGCTCAAGGTGGAATTCGTGCAATCCGTTTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCTGCTAAGTCTTCAGTACGTCGCGGTGCACCATTTGGACATTTTGA
TGCCAACATGAAAGATATTTCGGAGTTACGTATTGTACGTACTTGGCGTTTTGATCCAGCTGAAGCGGAATTTGAGATCC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.415

100

0.874