Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI76_RS01725 Genome accession   NZ_CP139249
Coordinates   372562..373035 (+) Length   157 a.a.
NCBI ID   WP_104079747.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367562..378035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS01700 (SOI76_01700) spoT 368022..370127 (-) 2106 WP_032057263.1 RelA/SpoT family protein -
  SOI76_RS01705 (SOI76_01705) - 370143..370298 (-) 156 WP_014207816.1 hypothetical protein -
  SOI76_RS01710 (SOI76_01710) rpoZ 370337..370615 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI76_RS01715 (SOI76_01715) gmk 370688..371317 (-) 630 WP_002116973.1 guanylate kinase -
  SOI76_RS01720 (SOI76_01720) ispH 371440..372390 (+) 951 WP_016143645.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI76_RS01725 (SOI76_01725) fimU 372562..373035 (+) 474 WP_104079747.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI76_RS01730 (SOI76_01730) pilV 373035..373538 (+) 504 WP_104079748.1 type IV pilus modification protein PilV Machinery gene
  SOI76_RS01735 (SOI76_01735) - 373538..374512 (+) 975 WP_104079749.1 PilW family protein -
  SOI76_RS01740 (SOI76_01740) - 374515..375279 (+) 765 WP_104079750.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16956.55 Da        Isoelectric Point: 5.6445

>NTDB_id=908282 SOI76_RS01725 WP_104079747.1 372562..373035(+) (fimU) [Acinetobacter pittii strain MCR8900]
MRGITPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESIRFDTNQRDLINTLSDAKSQAVLSHANVSVNLNSNAANTLT
TFNWIADKDNSLELKLLATDGTTTSLSTSNIIFIPNGTVSSISQDLLISMCNSQLHVKKSFVLSKLGSIFMNPKETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908282 SOI76_RS01725 WP_104079747.1 372562..373035(+) (fimU) [Acinetobacter pittii strain MCR8900]
ATGAGGGGAATTACTCCGCAAGACGGGTTCACCTTGGTTGAACTTATGGTGACGATTGCGGTCATGGCGATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGTATAAGGTTTGATACTAATCAAAGAGACTTAATCAACACACTAT
CTGATGCGAAAAGTCAGGCTGTACTAAGTCATGCAAATGTTTCTGTAAATCTAAACTCAAATGCTGCTAATACTTTAACA
ACTTTTAACTGGATTGCAGACAAAGATAATAGTCTTGAGCTAAAACTTTTAGCAACGGATGGAACTACAACATCACTATC
TACCTCAAACATCATATTTATACCAAATGGGACGGTTTCTAGTATTTCACAAGATTTGCTTATTTCTATGTGCAATTCTC
AATTACACGTTAAGAAAAGTTTTGTTTTATCAAAACTGGGTTCCATCTTTATGAATCCAAAGGAAACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

64.331

100

0.643