Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SOI69_RS13995 Genome accession   NZ_CP139248
Coordinates   2975646..2977214 (+) Length   522 a.a.
NCBI ID   WP_320539494.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970646..2982214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS13975 (SOI69_13975) hom 2971139..2972440 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  SOI69_RS13980 (SOI69_13980) thrC 2972495..2973634 (+) 1140 WP_002048893.1 threonine synthase -
  SOI69_RS13985 (SOI69_13985) pbpG 2973741..2974787 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI69_RS13990 (SOI69_13990) gacA 2975000..2975635 (+) 636 WP_002121174.1 response regulator -
  SOI69_RS13995 (SOI69_13995) pilS 2975646..2977214 (+) 1569 WP_320539494.1 PAS domain-containing sensor histidine kinase Regulator
  SOI69_RS14000 (SOI69_14000) pilR 2977238..2978650 (+) 1413 WP_320539495.1 sigma-54 dependent transcriptional regulator Regulator
  SOI69_RS14005 (SOI69_14005) ctpA 2978654..2979838 (-) 1185 WP_014208171.1 S41 family peptidase -
  SOI69_RS14010 (SOI69_14010) gpmI 2979854..2981401 (-) 1548 WP_320539496.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59125.64 Da        Isoelectric Point: 6.2829

>NTDB_id=908250 SOI69_RS13995 WP_320539494.1 2975646..2977214(+) (pilS) [Acinetobacter pittii strain HCG18]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLIQLLCFKFIATQATRQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAIIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLSDVK
HTIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=908250 SOI69_RS13995 WP_320539494.1 2975646..2977214(+) (pilS) [Acinetobacter pittii strain HCG18]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTATTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATGTTATTTGCCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGATTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCATTCTTATTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACGTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGGCAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAATGACTTCTTAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATACGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941