Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NC3_RS11100 Genome accession   NZ_AP025264
Coordinates   2183447..2184250 (-) Length   267 a.a.
NCBI ID   WP_099496600.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178447..2189250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS11080 (NC3_21510) - 2178454..2180526 (-) 2073 WP_017367572.1 sigma-54 interaction domain-containing protein -
  NC3_RS11085 (NC3_21520) - 2180676..2180912 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  NC3_RS11090 (NC3_21530) - 2180946..2181683 (-) 738 WP_017367573.1 glycerophosphodiester phosphodiesterase -
  NC3_RS11095 (NC3_21540) - 2181910..2183010 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  NC3_RS11100 (NC3_21550) spo0A 2183447..2184250 (-) 804 WP_099496600.1 sporulation transcription factor Spo0A Regulator
  NC3_RS11105 (NC3_21560) spoIVB 2184534..2185811 (-) 1278 WP_017367575.1 SpoIVB peptidase -
  NC3_RS11110 (NC3_21570) recN 2186010..2187743 (-) 1734 WP_035390783.1 DNA repair protein RecN Machinery gene
  NC3_RS11115 (NC3_21580) ahrC 2187778..2188227 (-) 450 WP_007501163.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29881.37 Da        Isoelectric Point: 6.3918

>NTDB_id=90825 NC3_RS11100 WP_099496600.1 2183447..2184250(-) (spo0A) [Bacillus altitudinis strain NC3]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKPESKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=90825 NC3_RS11100 WP_099496600.1 2183447..2184250(-) (spo0A) [Bacillus altitudinis strain NC3]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCAGTCGATTTGGGCGCATCCTACTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAACCTGAATCGAAACGTAAGAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGTTATTTATACTTAAGAGAAGCCATTTCAATGGTGTACAATGATAT
AGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCGTCACTCTTTGGCTACACAGTC
AGCATGTCAAAAGCCAAACCGACCAATTCCGAATTTATTGCCATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment