Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI69_RS13835 Genome accession   NZ_CP139248
Coordinates   2944678..2945004 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain HCG18     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2939678..2950004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS13815 (SOI69_13815) - 2939785..2940411 (-) 627 WP_005065779.1 FHA domain-containing protein -
  SOI69_RS13820 (SOI69_13820) gspD 2940452..2942722 (-) 2271 WP_032037665.1 type II secretion system secretin GspD -
  SOI69_RS13825 (SOI69_13825) - 2942764..2943600 (-) 837 WP_005079413.1 type II secretion system protein N -
  SOI69_RS13830 (SOI69_13830) gspN 2943600..2944343 (-) 744 WP_002121195.1 type II secretion system protein N -
  SOI69_RS13835 (SOI69_13835) hns 2944678..2945004 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI69_RS13840 (SOI69_13840) - 2945199..2945639 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI69_RS13845 (SOI69_13845) - 2945647..2946840 (-) 1194 WP_202724773.1 heme biosynthesis protein HemY -
  SOI69_RS13850 (SOI69_13850) - 2946850..2947692 (-) 843 WP_063097985.1 hypothetical protein -
  SOI69_RS13855 (SOI69_13855) hemD 2947701..2948468 (-) 768 WP_320539485.1 uroporphyrinogen-III synthase -
  SOI69_RS13860 (SOI69_13860) hemC 2948472..2949389 (-) 918 WP_320539486.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908248 SOI69_RS13835 WP_000801427.1 2944678..2945004(-) (hns) [Acinetobacter pittii strain HCG18]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908248 SOI69_RS13835 WP_000801427.1 2944678..2945004(-) (hns) [Acinetobacter pittii strain HCG18]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1