Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NC3_RS10155 Genome accession   NZ_AP025264
Coordinates   2011898..2012533 (+) Length   211 a.a.
NCBI ID   WP_236798155.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006898..2017533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS10115 (NC3_19600) - 2007063..2008181 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  NC3_RS10120 (NC3_19610) - 2008230..2008736 (-) 507 WP_008344623.1 PTS sugar transporter subunit IIA -
  NC3_RS10125 (NC3_19620) - 2008905..2009324 (+) 420 WP_116307053.1 Hsp20/alpha crystallin family protein -
  NC3_RS10130 (NC3_19630) - 2009346..2009798 (-) 453 WP_236797589.1 YppG family protein -
  NC3_RS10135 (NC3_19640) - 2009907..2010287 (-) 381 WP_225310452.1 YppE family protein -
  NC3_RS10140 (NC3_19650) - 2010337..2010570 (-) 234 WP_231131595.1 DUF5446 family protein -
  NC3_RS10145 sspM 2010767..2010871 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  NC3_RS10150 (NC3_19660) - 2010895..2011851 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  NC3_RS10155 (NC3_19670) recU 2011898..2012533 (+) 636 WP_236798155.1 Holliday junction resolvase RecU Machinery gene
  NC3_RS10160 (NC3_19680) - 2012553..2015240 (+) 2688 WP_019744017.1 PBP1A family penicillin-binding protein -
  NC3_RS10165 (NC3_19690) - 2015276..2015785 (-) 510 WP_019744018.1 YpoC family protein -
  NC3_RS10170 (NC3_19700) nth 2015782..2016444 (-) 663 WP_008344602.1 endonuclease III -
  NC3_RS10175 (NC3_19710) - 2016462..2017166 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24367.71 Da        Isoelectric Point: 9.7581

>NTDB_id=90824 NC3_RS10155 WP_236798155.1 2011898..2012533(+) (recU) [Bacillus altitudinis strain NC3]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQASTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDRKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=90824 NC3_RS10155 WP_236798155.1 2011898..2012533(+) (recU) [Bacillus altitudinis strain NC3]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAAGCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGGAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.864

94.313

0.687

Multiple sequence alignment