Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABRA90_RS20740 Genome accession   NZ_CP158308
Coordinates   4236430..4237059 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain CM2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4231430..4242059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA90_RS20725 (ABRA90_20710) helD 4231672..4233726 (-) 2055 WP_012311774.1 DNA helicase IV -
  ABRA90_RS20730 (ABRA90_20715) yccF 4233849..4234295 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABRA90_RS20735 (ABRA90_20720) yccS 4234305..4236467 (+) 2163 WP_000875033.1 YccS family putative transporter -
  ABRA90_RS20740 (ABRA90_20725) sxy/tfoX 4236430..4237059 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABRA90_RS20745 (ABRA90_20730) sulA 4237278..4237787 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABRA90_RS20750 (ABRA90_20735) ompA 4238143..4239195 (+) 1053 WP_024175778.1 porin OmpA -
  ABRA90_RS20755 (ABRA90_20740) matP 4239271..4239723 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -
  ABRA90_RS20760 (ABRA90_20745) ycbZ 4239909..4241669 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=908234 ABRA90_RS20740 WP_000839153.1 4236430..4237059(-) (sxy/tfoX) [Escherichia coli strain CM2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908234 ABRA90_RS20740 WP_000839153.1 4236430..4237059(-) (sxy/tfoX) [Escherichia coli strain CM2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1