Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NC3_RS07045 Genome accession   NZ_AP025264
Coordinates   1386392..1386667 (+) Length   91 a.a.
NCBI ID   WP_236798049.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381392..1391667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS07020 (NC3_13360) - 1381482..1381757 (-) 276 WP_008345136.1 hypothetical protein -
  NC3_RS07025 (NC3_13370) - 1381902..1383521 (+) 1620 WP_017359403.1 ABC-F family ATP-binding cassette domain-containing protein -
  NC3_RS07030 (NC3_13380) - 1383562..1384794 (-) 1233 WP_008345134.1 aminopeptidase -
  NC3_RS07035 (NC3_13390) - 1384902..1385033 (-) 132 WP_003210922.1 protein YkpC -
  NC3_RS07040 (NC3_13400) mreBH 1385108..1386115 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  NC3_RS07045 (NC3_13410) abrB 1386392..1386667 (+) 276 WP_236798049.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NC3_RS07050 (NC3_13420) - 1386815..1388104 (+) 1290 WP_007498613.1 ATP-binding protein -
  NC3_RS07055 (NC3_13430) - 1388132..1388974 (+) 843 WP_046343442.1 gamma-glutamylcyclotransferase -
  NC3_RS07060 (NC3_13440) - 1389012..1389680 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10177.84 Da        Isoelectric Point: 4.5332

>NTDB_id=90818 NC3_RS07045 WP_236798049.1 1386392..1386667(+) (abrB) [Bacillus altitudinis strain NC3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQ

Nucleotide


Download         Length: 276 bp        

>NTDB_id=90818 NC3_RS07045 WP_236798049.1 1386392..1386667(+) (abrB) [Bacillus altitudinis strain NC3]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGAGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

100

0.549

Multiple sequence alignment