Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ABRA90_RS00125 Genome accession   NZ_CP158308
Coordinates   20758..21945 (+) Length   395 a.a.
NCBI ID   WP_001161839.1    Uniprot ID   -
Organism   Escherichia coli strain CM2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 15758..26945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA90_RS00110 (ABRA90_00110) - 16273..17949 (+) 1677 WP_001376029.1 polysaccharide biosynthesis/export family protein -
  ABRA90_RS00115 (ABRA90_00115) kdsB 17959..18699 (+) 741 WP_000030762.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABRA90_RS00120 (ABRA90_00120) - 18696..20723 (+) 2028 WP_347070981.1 capsular polysaccharide biosynthesis protein -
  ABRA90_RS00125 (ABRA90_00125) kpsS 20758..21945 (+) 1188 WP_001161839.1 capsular biosynthesis protein Regulator
  ABRA90_RS00130 (ABRA90_00130) - 22614..24191 (-) 1578 WP_001376030.1 nucleotidyltransferase family protein -
  ABRA90_RS00135 (ABRA90_00135) - 24188..24556 (-) 369 WP_000821214.1 hypothetical protein -
  ABRA90_RS00140 (ABRA90_00140) - 24559..25275 (-) 717 WP_350337461.1 glycosyltransferase family 2 protein -
  ABRA90_RS00145 (ABRA90_00145) - 25272..26642 (-) 1371 WP_000867867.1 hypothetical protein -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 47040.40 Da        Isoelectric Point: 10.1525

>NTDB_id=908166 ABRA90_RS00125 WP_001161839.1 20758..21945(+) (kpsS) [Escherichia coli strain CM2]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKLLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGFKKK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=908166 ABRA90_RS00125 WP_001161839.1 20758..21945(+) (kpsS) [Escherichia coli strain CM2]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGATGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGACAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGCTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGGGCTTTAAAAAAAAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.051

99.241

0.397