Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABRA90_RS00045 Genome accession   NZ_CP158308
Coordinates   7588..8064 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain CM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2588..13064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA90_RS00015 (ABRA90_00015) - 3183..4133 (-) 951 WP_000157733.1 hypothetical protein -
  ABRA90_RS00020 (ABRA90_00020) - 4239..5123 (+) 885 WP_001696588.1 GTPase -
  ABRA90_RS00025 (ABRA90_00025) - 5242..5919 (+) 678 WP_001097365.1 hypothetical protein -
  ABRA90_RS00030 (ABRA90_00030) - 5925..6077 (+) 153 WP_001696589.1 DUF905 family protein -
  ABRA90_RS00035 (ABRA90_00035) - 6178..6996 (+) 819 WP_095597205.1 DUF932 domain-containing protein -
  ABRA90_RS00040 (ABRA90_00040) - 7087..7572 (+) 486 WP_095597204.1 antirestriction protein -
  ABRA90_RS00045 (ABRA90_00045) radC 7588..8064 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  ABRA90_RS00050 (ABRA90_00050) - 8127..8348 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABRA90_RS00055 (ABRA90_00055) - 8367..9010 (+) 644 Protein_10 antitoxin of toxin-antitoxin stability system -
  ABRA90_RS00060 (ABRA90_00060) - 9060..9428 (+) 369 WP_001320394.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABRA90_RS00065 (ABRA90_00065) - 9518..9892 (+) 375 Protein_12 TA system toxin CbtA family protein -
  ABRA90_RS00070 (ABRA90_00070) - 9889..10377 (+) 489 WP_000777545.1 DUF5983 family protein -
  ABRA90_RS00075 (ABRA90_00075) - 10389..10586 (+) 198 WP_032205013.1 DUF957 domain-containing protein -
  ABRA90_RS00080 (ABRA90_00080) - 10671..10808 (+) 138 Protein_15 restriction endonuclease subunit M -
  ABRA90_RS00085 (ABRA90_00085) - 10846..12384 (-) 1539 WP_000099144.1 IS66-like element ISEc22 family transposase -
  ABRA90_RS00090 (ABRA90_00090) tnpB 12433..12780 (-) 348 WP_024210273.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=908165 ABRA90_RS00045 WP_001186774.1 7588..8064(+) (radC) [Escherichia coli strain CM2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=908165 ABRA90_RS00045 WP_001186774.1 7588..8064(+) (radC) [Escherichia coli strain CM2]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399