Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SH594_RS12550 Genome accession   NZ_CP139214
Coordinates   2439553..2439831 (+) Length   92 a.a.
NCBI ID   WP_063547292.1    Uniprot ID   -
Organism   Bacillus cereus strain A01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434553..2444831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH594_RS12525 (SH594_12525) - 2435344..2435946 (+) 603 WP_063547290.1 hypothetical protein -
  SH594_RS12530 (SH594_12530) - 2436251..2437432 (+) 1182 WP_063547291.1 agmatine/peptidylarginine deiminase -
  SH594_RS12535 (SH594_12535) - 2437559..2437762 (-) 204 WP_154816433.1 hypothetical protein -
  SH594_RS12540 (SH594_12540) - 2437906..2438157 (-) 252 WP_000827555.1 response regulator transcription factor -
  SH594_RS12545 (SH594_12545) - 2438534..2439412 (+) 879 WP_000397972.1 helix-turn-helix domain-containing protein -
  SH594_RS12550 (SH594_12550) abrB 2439553..2439831 (+) 279 WP_063547292.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SH594_RS12555 (SH594_12555) - 2440357..2441607 (+) 1251 WP_063547293.1 hypothetical protein -
  SH594_RS12560 (SH594_12560) - 2441675..2442433 (+) 759 WP_029442323.1 TSUP family transporter -
  SH594_RS12565 (SH594_12565) - 2442686..2443345 (+) 660 WP_063547294.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10406.33 Da        Isoelectric Point: 10.0092

>NTDB_id=908162 SH594_RS12550 WP_063547292.1 2439553..2439831(+) (abrB) [Bacillus cereus strain A01]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACVLTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=908162 SH594_RS12550 WP_063547292.1 2439553..2439831(+) (abrB) [Bacillus cereus strain A01]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGTACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489