Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SH594_RS09965 Genome accession   NZ_CP139214
Coordinates   1951843..1952130 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain A01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946843..1957130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH594_RS09945 (SH594_09945) - 1948016..1948213 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  SH594_RS09950 (SH594_09950) - 1948244..1948705 (+) 462 WP_023521733.1 NUDIX hydrolase -
  SH594_RS09955 (SH594_09955) nadE 1948754..1949572 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  SH594_RS09960 (SH594_09960) - 1949846..1951726 (+) 1881 WP_063547094.1 FtsX-like permease family protein -
  SH594_RS09965 (SH594_09965) abrB 1951843..1952130 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SH594_RS09970 (SH594_09970) - 1952406..1953353 (+) 948 WP_063547095.1 serine protease -
  SH594_RS09975 (SH594_09975) - 1953393..1953701 (-) 309 WP_001259912.1 helix-turn-helix transcriptional regulator -
  SH594_RS09980 (SH594_09980) - 1953808..1954743 (+) 936 WP_063547096.1 aldo/keto reductase -
  SH594_RS09985 (SH594_09985) - 1954791..1955967 (+) 1177 Protein_1881 MFS transporter -
  SH594_RS09990 (SH594_09990) - 1956262..1956486 (-) 225 WP_000162602.1 hypothetical protein -
  SH594_RS09995 (SH594_09995) - 1956571..1956918 (-) 348 WP_000426321.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=908159 SH594_RS09965 WP_000648324.1 1951843..1952130(+) (abrB) [Bacillus cereus strain A01]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=908159 SH594_RS09965 WP_000648324.1 1951843..1952130(+) (abrB) [Bacillus cereus strain A01]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526