Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SH594_RS06660 Genome accession   NZ_CP139214
Coordinates   1315735..1316058 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain A01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310735..1321058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH594_RS06635 (SH594_06635) - 1310775..1312061 (+) 1287 WP_063546889.1 D-alanyl-D-alanine carboxypeptidase family protein -
  SH594_RS06640 (SH594_06640) sipW 1312259..1312828 (+) 570 WP_000767802.1 signal peptidase I SipW -
  SH594_RS06645 (SH594_06645) - 1312889..1313476 (+) 588 WP_063546891.1 CalY family protein -
  SH594_RS06650 (SH594_06650) - 1313607..1314683 (+) 1077 WP_407708841.1 DUF4047 domain-containing protein -
  SH594_RS06655 (SH594_06655) calY 1315069..1315662 (+) 594 WP_000053715.1 biofilm matrix protein CalY -
  SH594_RS06660 (SH594_06660) sinR 1315735..1316058 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  SH594_RS06665 (SH594_06665) - 1316138..1316272 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  SH594_RS06670 (SH594_06670) inhA1 1316615..1319002 (+) 2388 WP_063546895.1 M6 family metalloprotease immune inhibitor InhA1 -
  SH594_RS06675 (SH594_06675) - 1319175..1320542 (+) 1368 WP_063546897.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=908156 SH594_RS06660 WP_000578885.1 1315735..1316058(-) (sinR) [Bacillus cereus strain A01]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=908156 SH594_RS06660 WP_000578885.1 1315735..1316058(-) (sinR) [Bacillus cereus strain A01]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692