Detailed information NTG0908150

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SH594_RS06090
• Genome accession: NZ_CP139214
• Coordinates: 1207296..1209896 (+)
• Length: 866 a.a.
• NCBI ID: WP_063546788.1
• Uniprot ID: -
• Organism: Bacillus cereus strain A01
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1202296..1214896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SH594_RS06055 (SH594_06055)	prsA	1203058..1203915 (-)	858	WP_063546784.1	peptidylprolyl isomerase PrsA	-
SH594_RS06060 (SH594_06060)	-	1204045..1204176 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
SH594_RS06065 (SH594_06065)	-	1204277..1205134 (+)	858	WP_016082482.1	YitT family protein	-
SH594_RS06070 (SH594_06070)	-	1205160..1205357 (-)	198	WP_000527408.1	DUF3813 domain-containing protein	-
SH594_RS06075 (SH594_06075)	-	1205358..1205498 (-)	141	WP_000516816.1	hypothetical protein	-
SH594_RS06080 (SH594_06080)	-	1205604..1206413 (-)	810	WP_063546786.1	Cof-type HAD-IIB family hydrolase	-
SH594_RS06085 (SH594_06085)	-	1206906..1207085 (+)	180	WP_000531422.1	YjzC family protein	-
SH594_RS06090 (SH594_06090)	clpC	1207296..1209896 (+)	2601	WP_063546788.1	ATP-dependent chaperone ClpB	Regulator
SH594_RS06095 (SH594_06095)	-	1209935..1210117 (-)	183	WP_001211116.1	YjzD family protein	-
SH594_RS06100 (SH594_06100)	-	1210274..1211008 (+)	735	WP_000028690.1	hydrolase	-
SH594_RS06105 (SH594_06105)	-	1211038..1211910 (+)	873	WP_000487723.1	NAD(P)-dependent oxidoreductase	-
SH594_RS06110 (SH594_06110)	comZ	1211965..1212141 (+)	177	WP_001986215.1	ComZ family protein	Regulator
SH594_RS06115 (SH594_06115)	fabH	1212373..1213305 (+)	933	WP_001100532.1	beta-ketoacyl-ACP synthase III	-
SH594_RS06120 (SH594_06120)	fabF	1213337..1214575 (+)	1239	WP_000412656.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97451.50 Da
• Isoelectric Point: 5.2398

>NTDB_id=908150 SH594_RS06090 WP_063546788.1 1207296..1209896(+) (clpC) [Bacillus cereus strain A01]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQSAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFARLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHRVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLEGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLAERHIT
VELTDAAKKFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=908150 SH594_RS06090 WP_063546788.1 1207296..1209896(+) (clpC) [Bacillus cereus strain A01]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAAGCGCTGAAAGCTTAATTAAAAAGAAACCTTCTGTAACAGGGAGCGGTGCAGAG
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAATTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTCGAACATGTATTGCTTGCTTTTTCCGAAGAAAAAGGCGATATAAATCAATTATTTGCAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCAGAAGTGAGAGCTGGGAAAATTGATCCTGTTATCGGCCGAGA
TAGTGAAATTCGACGCGTTATCCGCATTCTTTCACGTAAAACGAAAAACAATCCTGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCGCTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATCGTTGGAGCTGGTAAAACAGAAG
GTGCGATGGATGCAGGAAATATGTTAAAACCGATGCTTGCTCGTGGTGAACTGCATTGTATCGGGGCGACAACATTAGAT
GAATATCGTAAATATATTGAAAAAGATCCAGCACTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACGATTTCCATATTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGCTTCTTACCGGATAAAGCGATTGACCTTGTTGATGAAGCG
TGCGCAACAATTCGTACAGAAATCGATTCTATGCCGACAGAATTAGATGAAGTAACGCGTCGTATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAGCGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCACAGAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCTGCAATCGAAAAAGAATTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCTAAACTTGTTGAAGGC
GAACGTGAGAAATTACTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCCTAGTATC
AGACGCGGTTCTTCGTGCACGCGCTGGTATTAAAGACCCGAATCGTCCAATTGGTTCCTTCATTTTCTTAGGCCCTACGG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTTGATAGTGAAGAGCAAATGATTCGTATTGACATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTAGGGTATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCAGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCACAAGGAAGAACAGTAGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTACTAGAGGGATTAGAAGAAGATGGTTCGATTAAAGAGGAATCAAGAGA
CCTTGTAATGGGGCAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTTGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGCCGTCTAGCTGAACGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAAAATTTGTTGTAGAAGCTGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCAAGAGAATTAATTGCAGGAACAATTACAGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATGA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA lid domain (AAA_lid_9) (345-447)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.886	100	0.484
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.876	100	0.423
clpC	Lactococcus lactis subsp. cremoris KW2	47.832	82.564	0.395