Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SJN48_RS18420 Genome accession   NZ_CP139212
Coordinates   3882386..3882712 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain WWTP     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3877386..3887712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS18400 (SJN48_18445) - 3877487..3878113 (-) 627 WP_057070670.1 FHA domain-containing protein -
  SJN48_RS18405 (SJN48_18450) gspD 3878154..3880430 (-) 2277 WP_057070669.1 type II secretion system secretin GspD -
  SJN48_RS18410 (SJN48_18455) - 3880472..3881308 (-) 837 WP_069036352.1 type II secretion system protein N -
  SJN48_RS18415 (SJN48_18460) gspN 3881308..3882051 (-) 744 WP_016144128.1 type II secretion system protein N -
  SJN48_RS18420 (SJN48_18465) hns 3882386..3882712 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SJN48_RS18425 (SJN48_18470) - 3882907..3883347 (-) 441 WP_002121251.1 thioesterase family protein -
  SJN48_RS18430 (SJN48_18475) - 3883355..3884548 (-) 1194 WP_206224500.1 heme biosynthesis protein HemY -
  SJN48_RS18435 (SJN48_18480) - 3884558..3885400 (-) 843 WP_130121627.1 hypothetical protein -
  SJN48_RS18440 (SJN48_18485) hemD 3885409..3886176 (-) 768 WP_130121625.1 uroporphyrinogen-III synthase -
  SJN48_RS18445 (SJN48_18490) hemC 3886180..3887097 (-) 918 WP_213073500.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908130 SJN48_RS18420 WP_000801427.1 3882386..3882712(-) (hns) [Acinetobacter pittii strain WWTP]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908130 SJN48_RS18420 WP_000801427.1 3882386..3882712(-) (hns) [Acinetobacter pittii strain WWTP]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1