Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SJN48_RS17915 Genome accession   NZ_CP139212
Coordinates   3771646..3773874 (+) Length   742 a.a.
NCBI ID   WP_130120458.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3766646..3778874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS17890 (SJN48_17930) lnt 3767027..3768586 (+) 1560 WP_086611609.1 apolipoprotein N-acyltransferase -
  SJN48_RS17895 (SJN48_17935) csaA 3768588..3768926 (-) 339 WP_005079284.1 tRNA-binding protein -
  SJN48_RS17900 (SJN48_17940) - 3769072..3769416 (-) 345 WP_130120455.1 hypothetical protein -
  SJN48_RS17905 (SJN48_17945) gspG 3769684..3770268 (-) 585 WP_165382142.1 type II secretion system major pseudopilin GspG -
  SJN48_RS17910 (SJN48_17950) gspF 3770292..3771497 (-) 1206 WP_032056277.1 type II secretion system inner membrane protein GspF -
  SJN48_RS17915 (SJN48_17955) priA 3771646..3773874 (+) 2229 WP_130120458.1 primosomal protein N' Machinery gene
  SJN48_RS17920 (SJN48_17960) kefB 3773951..3775795 (+) 1845 WP_407323864.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  SJN48_RS17925 (SJN48_17965) hslO 3775959..3776834 (+) 876 WP_130120460.1 Hsp33 family molecular chaperone HslO -
  SJN48_RS17930 (SJN48_17970) - 3776972..3777583 (+) 612 WP_130120461.1 LysE family translocator -
  SJN48_RS17935 (SJN48_17975) cbpA 3777730..3778686 (+) 957 WP_017402580.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84063.89 Da        Isoelectric Point: 8.5606

>NTDB_id=908126 SJN48_RS17915 WP_130120458.1 3771646..3773874(+) (priA) [Acinetobacter pittii strain WWTP]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISELL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPTPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTALQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSTERARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=908126 SJN48_RS17915 WP_130120458.1 3771646..3773874(+) (priA) [Acinetobacter pittii strain WWTP]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAATCTAA
TTGGCATCATTACTGAAAAAGTTGACCCAAGTGAATCATTTACAGGAACCTTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAATTGGTGA
GGTCATGCAAACTGCCCTACCCGCATTATTGCGTCAGGGCAAACCGATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CCTGTGACAATGTTGAAGCCCTACTAAAGCGTTCTGTTAAGCAACAAGATGCGTATCAAATTTTAAAATTACACCCTGCT
GGAACTACAGAAAATATTCTCAATTTAAGTGGTGTAGAAACAGCAACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGCACGCTCGAACCACATGACTTTAGCCCAACACCTGTTCAATTGGCACAAATGCCGCTCACGCTCAATGAAGACCAAA
AGAAAGCAACCCAACACGTCGTAAACGCACAGCATCAATACCAAGCATTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCTGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAATCGCGTTTTAACTGTGATATTGCTCTATTACACTCTGGCTTAAATGACTCCA
AACGTTTGCAGGCATGGCAACAGGCTCAGACTGGTAAAGCATCTATTATTTTAGGAACGCGCTCAGCCATTTATACGCCA
CTGCCACGTTTGGGCCTCATCATCTTAGATGAAGAACATGATCTGTCTTATAAGCAACAAGAAGGCTTCCGCTACCATGC
GCGTGATGTCGCTCTTTATCGAGGTCACTTACAAAGCTGCCCTGTTATTTTAGGTTCAGCAACTCCAAGCATAGATAGTT
ATTATTTAGTCGAAACTGGCAAATTAACTGCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCCCTTATTGAACAAATCAAACATACATTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTTTGTGAAAGCTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCTTAGGTGCTGGAACGGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGTACCAGTCGTGTCGGTAGCTGGCAAA
AAATTTATGACCGTATTCATCAAAACAAACCAACAATTTTGCTTGGCACTCAAATGCTGGCAAAAGGTCATCATTTCCCA
CACGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGGTTACTTAGTGTCGACATCCGCGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCTGGACGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ACCCTTTACTAACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCGCCTTACCGTTATGCAGTACTGATACGTGCAGAGTCCAAAGATCGCGACTACACCTTACATTTCTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGACATTGTTGATATTTGGGGACCGATTCCAGCCCCTATGGAGCGTAAAGCAG
GACGCTACCGCGCCCACATGGTAATTTTATCTACTGAACGTGCTCGTCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCGCCGCGCCAGCATCAACTCAGATTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977