Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   SJN48_RS17240 Genome accession   NZ_CP139212
Coordinates   3630512..3631312 (-) Length   266 a.a.
NCBI ID   WP_199977444.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3625512..3636312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS17220 (SJN48_17260) - 3626577..3627275 (-) 699 WP_130120428.1 tetratricopeptide repeat protein -
  SJN48_RS17225 (SJN48_17265) hisS 3627304..3628596 (-) 1293 WP_068565135.1 histidine--tRNA ligase -
  SJN48_RS17230 (SJN48_17270) ispG 3628593..3629708 (-) 1116 WP_002115078.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  SJN48_RS17235 (SJN48_17275) - 3629730..3630521 (-) 792 WP_017385735.1 RodZ domain-containing protein -
  SJN48_RS17240 (SJN48_17280) pilF 3630512..3631312 (-) 801 WP_199977444.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  SJN48_RS17245 (SJN48_17285) rlmN 3631327..3632562 (-) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SJN48_RS17250 (SJN48_17290) ndk 3632686..3633117 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  SJN48_RS17255 (SJN48_17295) iscX 3633231..3633431 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  SJN48_RS17260 (SJN48_17300) - 3633531..3634082 (-) 552 WP_005066176.1 phosphatase PAP2 family protein -
  SJN48_RS17265 (SJN48_17305) - 3634107..3635396 (-) 1290 WP_130120490.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30086.32 Da        Isoelectric Point: 9.0417

>NTDB_id=908122 SJN48_RS17240 WP_199977444.1 3630512..3631312(-) (pilF) [Acinetobacter pittii strain WWTP]
MSIPKLKTVLCMGIAVAFLASGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=908122 SJN48_RS17240 WP_199977444.1 3630512..3631312(-) (pilF) [Acinetobacter pittii strain WWTP]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGCAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAGAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCTACTGCAAATATGATGATGGGTATTTTG
CTACAGCAAGAAGGTAGCAAACCCAATTTAGAAAAAGCAGAACATTATTTCAAACGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTG
CTGGCGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAA
TTACGTGCCTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

94.361

100

0.944
  pilF Acinetobacter baylyi ADP1

76.154

97.744

0.744