Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SJN48_RS02395 Genome accession   NZ_CP139212
Coordinates   486630..487514 (+) Length   294 a.a.
NCBI ID   WP_130122096.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481630..492514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS02370 (SJN48_02375) - 481944..483191 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  SJN48_RS02375 (SJN48_02380) wrbA 483552..484154 (+) 603 WP_130122094.1 NAD(P)H:quinone oxidoreductase -
  SJN48_RS02380 (SJN48_02385) xpt 484206..484781 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  SJN48_RS02385 (SJN48_02390) - 484854..485567 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  SJN48_RS02390 (SJN48_02395) - 485726..486397 (-) 672 WP_002119526.1 hypothetical protein -
  SJN48_RS02395 (SJN48_02400) tonB2 486630..487514 (+) 885 WP_130122096.1 energy transducer TonB Machinery gene
  SJN48_RS02400 (SJN48_02405) ybeY 487567..488043 (-) 477 WP_057069048.1 rRNA maturation RNase YbeY -
  SJN48_RS02405 (SJN48_02410) phoL 488053..489141 (-) 1089 WP_002119513.1 PhoH family protein -
  SJN48_RS02410 (SJN48_02415) miaB 489179..490630 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33669.15 Da        Isoelectric Point: 7.2966

>NTDB_id=908107 SJN48_RS02395 WP_130122096.1 486630..487514(+) (tonB2) [Acinetobacter pittii strain WWTP]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKNHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=908107 SJN48_RS02395 WP_130122096.1 486630..487514(+) (tonB2) [Acinetobacter pittii strain WWTP]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGAATCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCTATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881