Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SJN48_RS01545 Genome accession   NZ_CP139212
Coordinates   326462..327103 (+) Length   213 a.a.
NCBI ID   WP_033848908.1    Uniprot ID   A0A013TY26
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321462..332103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01525 (SJN48_01530) - 321506..321838 (+) 333 WP_002116981.1 hypothetical protein -
  SJN48_RS01530 (SJN48_01535) rrmA 321841..322665 (+) 825 WP_130121785.1 putative RNA methyltransferase -
  SJN48_RS01535 (SJN48_01540) ponA 322681..325242 (-) 2562 WP_130121783.1 penicillin-binding protein PBP1a -
  SJN48_RS01540 (SJN48_01545) pilM 325404..326462 (+) 1059 WP_033848910.1 pilus assembly protein PilM Machinery gene
  SJN48_RS01545 (SJN48_01550) pilN 326462..327103 (+) 642 WP_033848908.1 PilN domain-containing protein Machinery gene
  SJN48_RS01550 (SJN48_01555) pilO 327100..327852 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  SJN48_RS01555 (SJN48_01560) pilP 327863..328390 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SJN48_RS01560 (SJN48_01565) pilQ 328453..330579 (+) 2127 WP_130121781.1 type IV pilus secretin PilQ Machinery gene
  SJN48_RS01565 (SJN48_01570) aroK 330591..331160 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23887.39 Da        Isoelectric Point: 6.4518

>NTDB_id=908093 SJN48_RS01545 WP_033848908.1 326462..327103(+) (pilN) [Acinetobacter pittii strain WWTP]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTPLGTDKGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908093 SJN48_RS01545 WP_033848908.1 326462..327103(+) (pilN) [Acinetobacter pittii strain WWTP]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAGCTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAAGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACCACAACAGATGATACCGCCAATACGCCTTTAGGTACGGATAAGGGGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013TY26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

71.707

96.244

0.69