Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SON02_RS08650 Genome accession   NZ_CP139211
Coordinates   1978598..1980346 (+) Length   582 a.a.
NCBI ID   WP_135028485.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973598..1985346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS08635 (SON02_08615) - 1973982..1974977 (-) 996 WP_135028478.1 YdcF family protein -
  SON02_RS08640 (SON02_08620) - 1976375..1976845 (+) 471 WP_135028480.1 MarR family winged helix-turn-helix transcriptional regulator -
  SON02_RS08645 (SON02_08625) rcrP 1976842..1978608 (+) 1767 WP_135028483.1 ABC transporter ATP-binding protein Regulator
  SON02_RS08650 (SON02_08630) rcrQ 1978598..1980346 (+) 1749 WP_135028485.1 ABC transporter ATP-binding protein Regulator
  SON02_RS08655 (SON02_08635) - 1980645..1981085 (+) 441 WP_135028487.1 CoA-binding protein -
  SON02_RS08660 (SON02_08640) - 1981085..1981597 (+) 513 WP_135028489.1 kinase -
  SON02_RS08665 (SON02_08645) efeO 1982404..1983264 (+) 861 WP_135028516.1 iron uptake system protein EfeO -
  SON02_RS08670 (SON02_08650) efeB 1983267..1984499 (+) 1233 WP_135028491.1 iron uptake transporter deferrochelatase/peroxidase subunit -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64158.10 Da        Isoelectric Point: 5.9822

>NTDB_id=908078 SON02_RS08650 WP_135028485.1 1978598..1980346(+) (rcrQ) [Streptococcus sp. LysM4]
MNNKTSSLFRQMKPYVKRFQVPFVIAVIGAVVSSVITVIGPDKLSEITDLITEGLMTGIDTAKISEIAVTLAILYGIGAV
VNYGQSFTISTIIQHFSRRLRTAIAEKMNRLPLGYFDRHSQGDTLSRVTNDVDTASQSLNQSLGTVLSSSILLAATLIMM
FKTNVILSFVAISSVLIGLAFVGVIMKQARGFFKSQQANLANVNGYVEEMYSGHQVVLSYYAGHEVKEQFEHLNQALYGS
MWKSQFISGIMMPMMMFIGNFGYVMVVLAGAALTLNGYATMGTIVAFMIYVRIFSQPLSQIAQGLTVLQSASAALGRVFE
FLGEKEMEDDHAKSQQLVSVKGNVTFEQVSFGYSPDNTIIRDFSARAKAGQKIAIVGPTGAGKTTIVNLLMKFYEINQGR
VLIDGVDIKTMKRSEVHDAFSMVLQDTWLFEGTIRENLIYNQQDISDEAVIQAAKAVGVHHFIMTLPEGYDTMLDDTVTL
SVGQKQLLTIARALLKEAPLLILDEATSSVDTRTEELIQKAMDTLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HETLMAQNGFYANLYNSQFDEE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=908078 SON02_RS08650 WP_135028485.1 1978598..1980346(+) (rcrQ) [Streptococcus sp. LysM4]
ATGAACAATAAAACATCTTCTTTATTTAGGCAGATGAAGCCTTATGTTAAACGTTTTCAAGTTCCTTTTGTGATCGCGGT
GATTGGAGCAGTTGTATCCAGTGTTATCACAGTAATCGGTCCTGACAAATTAAGCGAGATTACAGACTTGATCACCGAAG
GCTTAATGACAGGGATTGATACTGCTAAAATATCTGAAATTGCTGTGACTCTGGCGATTCTCTATGGAATTGGTGCTGTA
GTTAACTATGGTCAATCCTTTACTATTTCAACTATTATCCAGCATTTTTCAAGGCGTCTGCGGACAGCGATTGCCGAAAA
AATGAATAGACTTCCCTTGGGTTATTTTGATCGTCATTCTCAAGGTGATACCTTATCTCGCGTGACCAATGATGTGGATA
CAGCTAGCCAATCTCTGAACCAAAGTTTAGGAACAGTTCTCTCTTCTAGTATTCTCTTGGCTGCGACTCTTATTATGATG
TTCAAAACCAACGTAATCTTGTCTTTTGTTGCGATTAGTTCGGTTTTGATTGGCCTTGCCTTTGTTGGCGTTATCATGAA
ACAAGCGCGAGGCTTTTTCAAGAGCCAGCAAGCTAATCTTGCCAACGTCAATGGTTATGTAGAAGAAATGTATTCTGGTC
ATCAGGTTGTGCTAAGCTACTATGCAGGACATGAGGTGAAAGAGCAGTTTGAACATCTCAATCAGGCTTTATATGGTAGT
ATGTGGAAATCTCAGTTTATTTCTGGAATTATGATGCCTATGATGATGTTTATCGGAAACTTTGGCTATGTTATGGTTGT
GCTGGCTGGTGCTGCCTTGACCTTAAATGGTTATGCGACTATGGGGACGATTGTAGCTTTTATGATCTATGTTCGCATCT
TTTCTCAACCCTTGTCTCAGATTGCTCAGGGCTTGACCGTTTTACAATCTGCTAGTGCTGCTCTGGGACGTGTCTTTGAG
TTTTTGGGTGAAAAAGAAATGGAAGATGATCATGCAAAATCGCAACAGCTGGTTTCTGTGAAAGGGAATGTGACATTTGA
ACAGGTGTCTTTTGGGTATTCGCCTGATAACACTATCATCCGTGATTTCTCTGCAAGGGCTAAGGCAGGTCAAAAAATTG
CCATTGTTGGACCAACCGGTGCAGGAAAGACGACCATTGTTAACCTCTTGATGAAATTTTATGAGATTAATCAAGGACGG
GTTTTGATCGATGGTGTAGATATCAAGACGATGAAAAGATCTGAAGTTCATGATGCTTTTAGTATGGTCTTACAAGATAC
CTGGCTCTTTGAGGGAACGATCAGGGAAAATCTGATATATAATCAGCAAGACATTTCAGACGAGGCAGTTATTCAGGCTG
CAAAAGCAGTCGGGGTTCATCACTTTATCATGACCCTACCAGAGGGTTATGATACGATGCTTGATGATACGGTTACCTTA
TCGGTTGGTCAAAAGCAACTATTAACGATTGCTCGTGCGCTTTTAAAGGAGGCACCTCTTCTCATTCTTGATGAAGCGAC
TAGTTCTGTCGATACGCGAACGGAAGAGTTGATTCAAAAGGCTATGGACACGCTTATGGAAGGACGAACTTCCTTTGTCA
TTGCGCACCGTCTATCTACCATTCGTAATGCTGACCTCATTCTCGTCATGAAAGATGGTAATATCATCGAACAAGGAAAT
CACGAGACCCTTATGGCCCAAAATGGCTTCTATGCCAACCTATACAACAGCCAATTTGATGAGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(362-508)

ABC transporter transmembrane region (ABC_membrane)

(24-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.931

100

0.699