Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SON02_RS08645 Genome accession   NZ_CP139211
Coordinates   1976842..1978608 (+) Length   588 a.a.
NCBI ID   WP_135028483.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971842..1983608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS08635 (SON02_08615) - 1973982..1974977 (-) 996 WP_135028478.1 YdcF family protein -
  SON02_RS08640 (SON02_08620) - 1976375..1976845 (+) 471 WP_135028480.1 MarR family winged helix-turn-helix transcriptional regulator -
  SON02_RS08645 (SON02_08625) rcrP 1976842..1978608 (+) 1767 WP_135028483.1 ABC transporter ATP-binding protein Regulator
  SON02_RS08650 (SON02_08630) rcrQ 1978598..1980346 (+) 1749 WP_135028485.1 ABC transporter ATP-binding protein Regulator
  SON02_RS08655 (SON02_08635) - 1980645..1981085 (+) 441 WP_135028487.1 CoA-binding protein -
  SON02_RS08660 (SON02_08640) - 1981085..1981597 (+) 513 WP_135028489.1 kinase -
  SON02_RS08665 (SON02_08645) efeO 1982404..1983264 (+) 861 WP_135028516.1 iron uptake system protein EfeO -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65521.91 Da        Isoelectric Point: 5.2797

>NTDB_id=908077 SON02_RS08645 WP_135028483.1 1976842..1978608(+) (rcrP) [Streptococcus sp. LysM4]
MKKLFKRLNSKEWLMVLASIAFVCLTVWLELEVPNYMSEITKLLQFPDTTTSELWSPGLKMLGLSLASFGASVMVGFMAS
RLAASFTTRLRKDIFHRVLDYSDAEIKHFSIPSLLTRTTNDLTQIQLLFTMGLQVVTRGPIMAIWALSKIVGKSDNWLWA
VTGAVLINLVMMTILVTLAFPKQTIVQKLTDRLNSITREGLIGIRIVRAYNAEDYQNRKFAQANEELTSLNLFVSRLMAL
MNPVMMTISSSLGLAIYWIGAYLINRAEVPDKLPIFSDMVVFMSYAMQVVMGFMMMSALFIILPRVLVSTKRINEVLDLT
SSIISPQQSQSGAVESAQIIFDDVTFRYSDTSEPVIEHINFTAKAGDTVAFIGSTGSGKSTLVNLIPRFYDVSEGQILLD
GVDVRDYSQADLHAKVGYIPQKAVLFSGDIRSNIDFGESKESPLNDEAIWEALDLAQAKSFVEEKEDGLSSPVAQSGSNF
SGGQRQRLAIARALARKPEILIFDDSFSALDYRTDRMLREELAAHTVGMTKLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLASNEVYQEIAYSQLSKEELENEQ

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=908077 SON02_RS08645 WP_135028483.1 1976842..1978608(+) (rcrP) [Streptococcus sp. LysM4]
ATGAAGAAATTATTTAAACGTTTAAATAGCAAAGAGTGGCTGATGGTTTTGGCTAGTATTGCCTTTGTCTGTTTGACAGT
TTGGCTCGAGTTAGAAGTCCCGAATTACATGTCTGAAATCACCAAGCTCTTGCAATTCCCAGATACGACTACCTCAGAAC
TTTGGTCGCCAGGACTTAAAATGCTGGGCTTGTCGTTAGCAAGTTTTGGAGCCTCTGTTATGGTTGGGTTTATGGCATCG
CGGTTAGCTGCTAGCTTTACCACTCGTTTGCGTAAGGATATTTTTCACCGTGTGTTGGATTATTCAGATGCTGAGATCAA
GCACTTTAGCATTCCGAGTCTATTGACGCGAACCACCAATGATTTGACACAGATTCAGCTCTTGTTTACCATGGGCTTGC
AGGTTGTGACGCGTGGACCAATTATGGCGATTTGGGCACTGAGCAAGATTGTCGGAAAATCAGATAATTGGCTTTGGGCG
GTTACCGGAGCAGTCTTGATTAACCTTGTTATGATGACTATTTTGGTCACCTTGGCTTTTCCAAAACAAACGATTGTCCA
AAAGCTGACCGACCGTTTGAACAGCATTACGCGTGAGGGCTTAATCGGTATCCGTATCGTTCGGGCCTATAATGCTGAAG
ATTATCAAAACAGAAAATTTGCGCAGGCTAATGAAGAATTAACATCGCTTAACTTATTTGTCAGTCGCCTAATGGCTCTT
ATGAATCCTGTTATGATGACTATTTCGAGTAGCCTAGGTCTGGCAATTTATTGGATTGGAGCCTACCTCATCAATAGGGC
TGAGGTACCAGATAAACTACCCATTTTTAGCGATATGGTGGTTTTCATGTCCTATGCCATGCAGGTGGTTATGGGGTTCA
TGATGATGAGCGCCTTGTTTATCATTTTGCCTCGTGTCTTGGTTTCAACTAAGCGCATCAATGAAGTGTTGGATTTGACC
TCTTCTATCATTTCGCCTCAACAATCTCAGTCTGGGGCAGTAGAGTCTGCTCAGATTATCTTTGATGATGTAACTTTCCG
CTATTCTGATACATCAGAGCCTGTGATTGAGCATATCAATTTTACTGCAAAAGCCGGGGACACGGTCGCTTTCATTGGTT
CGACTGGTTCTGGAAAGTCAACCTTGGTGAACTTAATTCCGCGTTTTTATGATGTGAGTGAGGGGCAGATTTTGCTAGAT
GGTGTGGATGTAAGAGATTATAGCCAAGCAGACTTACATGCTAAAGTTGGCTATATTCCCCAAAAAGCAGTTTTGTTTTC
AGGTGATATTCGTAGTAATATTGACTTTGGAGAAAGCAAAGAAAGTCCACTCAATGATGAGGCGATTTGGGAAGCTCTGG
ATTTAGCGCAAGCTAAAAGCTTTGTCGAGGAAAAAGAAGACGGACTTTCTTCACCGGTTGCCCAGTCTGGAAGTAATTTT
TCAGGTGGTCAGCGCCAGCGTTTAGCGATTGCGCGCGCGCTTGCTCGTAAGCCAGAAATTTTAATTTTTGACGACTCATT
CTCAGCCCTTGATTATCGGACGGATCGTATGTTACGGGAGGAGCTCGCAGCACATACCGTAGGAATGACCAAGTTAATTG
TAGCTCAGCGGATTTCGACCATTATGGACGCGGATCAAATCTTGGTTCTTGATAAAGGAAAAGTTGTTGGCCAAGGAACT
CATAAAGAATTACTTGCAAGCAATGAAGTCTACCAAGAAATTGCTTACTCTCAATTGTCGAAGGAGGAATTGGAAAATGA
ACAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(20-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.562

100

0.697