Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SON02_RS07765 Genome accession   NZ_CP139211
Coordinates   1768838..1769572 (+) Length   244 a.a.
NCBI ID   WP_135029047.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763838..1774572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS07735 (SON02_07715) - 1763908..1765368 (+) 1461 WP_135029039.1 NCS2 family permease -
  SON02_RS07740 (SON02_07720) tsaE 1765570..1766016 (+) 447 WP_135029116.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SON02_RS07745 (SON02_07725) - 1766003..1766536 (+) 534 WP_135029040.1 GNAT family N-acetyltransferase -
  SON02_RS07750 (SON02_07730) - 1766533..1767636 (+) 1104 WP_135029042.1 LCP family protein -
  SON02_RS07755 (SON02_07735) - 1768072..1768362 (-) 291 WP_135029044.1 chemotaxis protein -
  SON02_RS07760 (SON02_07740) - 1768359..1768775 (-) 417 WP_135029046.1 HIT family protein -
  SON02_RS07765 (SON02_07745) pptA 1768838..1769572 (+) 735 WP_135029047.1 ABC transporter ATP-binding protein Regulator
  SON02_RS07770 (SON02_07750) - 1769569..1770615 (+) 1047 WP_135029049.1 ABC transporter permease -
  SON02_RS07775 (SON02_07755) ccrZ 1770665..1771459 (+) 795 WP_135029051.1 cell cycle regulator CcrZ -
  SON02_RS07780 (SON02_07760) trmB 1771456..1772091 (+) 636 WP_135029053.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SON02_RS07785 (SON02_07765) rimP 1772463..1772933 (+) 471 WP_135029055.1 ribosome maturation factor RimP -
  SON02_RS07790 (SON02_07770) nusA 1772967..1774115 (+) 1149 WP_135029056.1 transcription termination factor NusA -
  SON02_RS07795 (SON02_07775) rnpM 1774134..1774430 (+) 297 WP_135029059.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27236.65 Da        Isoelectric Point: 4.5927

>NTDB_id=908069 SON02_RS07765 WP_135029047.1 1768838..1769572(+) (pptA) [Streptococcus sp. LysM4]
MLEVKNVTGGYVNIPVLKDVSFQVADGELVGLIGLNGAGKSTTIKEIIGLLSPYQGQILIDGESLQSKPQDYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLDWEQAFVQAEKLLKIFRLDEKLEWFPVHFSKGMKQKVMIICAFMIQPSLLIVDEPF
LGLDPVAIDDLLRLLEEEKAKGTSILMSTHVLDTAEKMCDRFVILHRGEVRAQGNLAELQATFGREDASLNELYLALTRE
GAGV

Nucleotide


Download         Length: 735 bp        

>NTDB_id=908069 SON02_RS07765 WP_135029047.1 1768838..1769572(+) (pptA) [Streptococcus sp. LysM4]
ATGTTAGAAGTAAAAAATGTGACGGGTGGTTATGTCAATATTCCTGTTTTAAAAGACGTTTCCTTTCAAGTAGCTGATGG
AGAGTTGGTTGGATTGATTGGTCTAAATGGTGCAGGAAAATCAACGACTATAAAAGAAATTATTGGGCTTTTATCGCCCT
ATCAAGGACAGATTCTGATTGATGGGGAAAGCCTTCAATCAAAACCACAAGACTATCGGAAAAAAATTGGTTTTATTCCA
GAAACGCCGAGTCTCTATGAGGAACTGACCCTGAAAGAGCATCTAGAAGTGGTGGCGATGGCCTATGACTTGGACTGGGA
ACAGGCTTTTGTGCAGGCAGAAAAATTACTCAAAATCTTCCGATTAGATGAAAAATTGGAATGGTTTCCGGTTCATTTTT
CAAAAGGAATGAAGCAGAAAGTCATGATTATTTGCGCCTTTATGATCCAGCCGAGCCTGCTGATTGTTGACGAGCCATTT
TTGGGGCTAGATCCGGTGGCTATTGATGATTTGCTTCGTCTATTAGAAGAAGAAAAAGCGAAAGGTACTTCTATTTTGAT
GTCGACCCACGTCTTGGATACAGCTGAGAAAATGTGCGACCGCTTTGTCATTTTACATCGAGGAGAGGTGCGGGCGCAGG
GCAATTTGGCAGAACTACAAGCAACATTTGGTCGTGAAGATGCCAGCTTAAATGAGCTTTATCTTGCTCTTACCAGAGAG
GGTGCAGGAGTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.64

97.951

0.721
  pptA Streptococcus thermophilus LMD-9

72.385

97.951

0.709