Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ABQ280_RS06095 Genome accession   NZ_CP158284
Coordinates   1255723..1256874 (+) Length   383 a.a.
NCBI ID   WP_000020346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1250723..1261874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ280_RS06070 (ABQ280_06070) - 1251552..1252838 (+) 1287 WP_000664778.1 pitrilysin family protein -
  ABQ280_RS06075 (ABQ280_06075) - 1252838..1253542 (+) 705 WP_000646227.1 SDR family NAD(P)-dependent oxidoreductase -
  ABQ280_RS06080 (ABQ280_06080) - 1253647..1254474 (+) 828 WP_000214890.1 YmfK family protein -
  ABQ280_RS06085 (ABQ280_06085) - 1254493..1254885 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ABQ280_RS06090 (ABQ280_06090) pgsA 1254919..1255497 (+) 579 WP_001025092.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABQ280_RS06095 (ABQ280_06095) cinA 1255723..1256874 (+) 1152 WP_000020346.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ABQ280_RS06100 (ABQ280_06100) recA 1257039..1258082 (+) 1044 WP_000368166.1 recombinase RecA -
  ABQ280_RS06105 (ABQ280_06105) rny 1258436..1259995 (+) 1560 WP_001050913.1 ribonuclease Y -
  ABQ280_RS06110 (ABQ280_06110) - 1260292..1260507 (-) 216 WP_000026308.1 hypothetical protein -
  ABQ280_RS06115 (ABQ280_06115) - 1260681..1261478 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43237.52 Da        Isoelectric Point: 6.1914

>NTDB_id=908026 ABQ280_RS06095 WP_000020346.1 1255723..1256874(+) (cinA) [Staphylococcus aureus strain ATCC 6538]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=908026 ABQ280_RS06095 WP_000020346.1 1255723..1256874(+) (cinA) [Staphylococcus aureus strain ATCC 6538]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTGGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433