Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NC3_RS04170 Genome accession   NZ_AP025264
Coordinates   847150..847941 (+) Length   263 a.a.
NCBI ID   WP_035391276.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 842150..852941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS04135 (NC3_07780) - 842237..842785 (+) 549 WP_008341670.1 thioredoxin family protein -
  NC3_RS04140 (NC3_07790) - 843124..843591 (+) 468 WP_007496690.1 thiol-disulfide oxidoreductase DCC family protein -
  NC3_RS04145 (NC3_07800) - 843627..844883 (-) 1257 WP_008341668.1 transcriptional regulator -
  NC3_RS04150 (NC3_07810) - 845154..845741 (+) 588 WP_236798016.1 nitroreductase family protein -
  NC3_RS04155 (NC3_07820) - 845778..845933 (-) 156 WP_008341997.1 YfhD family protein -
  NC3_RS04160 - 845995..846105 (-) 111 WP_017358836.1 YfhE family protein -
  NC3_RS04165 (NC3_07830) - 846158..847054 (-) 897 WP_017366870.1 TIGR01777 family oxidoreductase -
  NC3_RS04170 (NC3_07840) recX 847150..847941 (+) 792 WP_035391276.1 recombination regulator RecX Regulator
  NC3_RS04175 (NC3_07850) - 847945..848259 (+) 315 WP_017358839.1 YfhH family protein -
  NC3_RS04180 (NC3_07860) - 848487..848660 (-) 174 WP_003217811.1 YpzG family protein -
  NC3_RS04185 (NC3_07870) - 848686..848835 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  NC3_RS04190 (NC3_07880) - 848952..849224 (+) 273 WP_017358840.1 YfhJ family protein -
  NC3_RS04195 (NC3_07890) - 849526..850509 (+) 984 WP_008341983.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30629.99 Da        Isoelectric Point: 6.7746

>NTDB_id=90800 NC3_RS04170 WP_035391276.1 847150..847941(+) (recX) [Bacillus altitudinis strain NC3]
MPYITKISAQQNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKDIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPNDLQLEE
AVKQVLKLVKKEKNRSAKEIEQRIKLQLQRKGFSFDIIDKALQEAYDGQEEEKEEEALHYMLEKAKRKVGYDGSFEKKMK
VKQFLYRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=90800 NC3_RS04170 WP_035391276.1 847150..847941(+) (recX) [Bacillus altitudinis strain NC3]
ATGCCCTATATTACGAAAATCTCTGCTCAGCAAAACAATACAGAACGCGTGAACATCTTTCTTGATGAAAAGTACGCTTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCATGATTTGAAAAAGGGAAAAGAGCTGGACGAAGCCGATATCATAGAGATTC
AATTCGGTGATGCAGTAAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCGTATCGGATGAGATCAGTGAAAGAAGTC
ACCGATTACTTGACGAAAAAAGACATACCAGCACCTGCTATTAGTGAAATTATACACAAATTAAAACATTATAAGTATGT
AAATGATCTTGAATTTGCAGAAGCGTATGTAAGCACCCACCGAAAAACGAATAGCAAAGGCCCGTCAGTGCTAAAAAAAG
AATTAAAGCTGAAAGGCATAGACGATGACACCATCGAACAAGCACTATCGCAATATCCGAATGATTTGCAGCTAGAGGAA
GCAGTGAAACAAGTGCTAAAGCTGGTTAAGAAAGAGAAAAACCGGTCCGCAAAAGAAATTGAACAGCGTATCAAATTGCA
GCTTCAGCGAAAAGGATTTTCATTTGATATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTTCACTATATGCTTGAGAAGGCAAAACGCAAGGTAGGTTATGACGGATCATTTGAGAAAAAAATGAAA
GTGAAGCAATTCCTTTACCGAAAAGGATTTGATCTTGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.118

100

0.631

Multiple sequence alignment