Detailed information NTG0907997

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SOL79_RS04770
• Genome accession: NZ_CP139210
• Coordinates: 1104582..1107032 (-)
• Length: 816 a.a.
• NCBI ID: WP_135029615.1
• Uniprot ID: -
• Organism: Streptococcus sp. VEG1o
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1099582..1112032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOL79_RS04745 (SOL79_04740)	hslO	1100377..1101243 (+)	867	WP_135029991.1	Hsp33 family molecular chaperone HslO	-
SOL79_RS04750 (SOL79_04745)	dusB	1101236..1102228 (+)	993	WP_135029988.1	tRNA dihydrouridine synthase DusB	-
SOL79_RS04755 (SOL79_04750)	-	1102523..1102666 (-)	144	WP_167752681.1	hypothetical protein	-
SOL79_RS04760 (SOL79_04755)	-	1103446..1103772 (+)	327	WP_306299843.1	IS630 transposase-related protein	-
SOL79_RS04765	-	1103840..1104282 (+)	443	Protein_948	transposase	-
SOL79_RS04770 (SOL79_04765)	clpC	1104582..1107032 (-)	2451	WP_135029615.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
SOL79_RS04775 (SOL79_04770)	-	1107034..1107492 (-)	459	WP_135029617.1	CtsR family transcriptional regulator	-
SOL79_RS04780 (SOL79_04775)	traF	1108275..1108622 (+)	348	WP_135029619.1	conjugal transfer protein TraF	-
SOL79_RS04785 (SOL79_04780)	-	1108624..1109340 (+)	717	WP_135029621.1	GNAT family acetyltransferase	-
SOL79_RS04790 (SOL79_04785)	tsf	1109510..1110550 (-)	1041	WP_135029623.1	translation elongation factor Ts	-
SOL79_RS04795 (SOL79_04790)	rpsB	1111087..1111869 (-)	783	WP_135029624.1	30S ribosomal protein S2	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90697.00 Da
• Isoelectric Point: 6.0956

>NTDB_id=907997 SOL79_RS04770 WP_135029615.1 1104582..1107032(-) (clpC) [Streptococcus sp. VEG1o]
MKFSNGLQRAYEDAQLIGQRYMCDYLETWHLLLAFVINPDTIAGAVLADYPFDIADYEQATYKVTERVYRENLEEFTFLQ
SSKRLDEAARFAQKIAEVLKAKQVGTEHLFMAMLLDKRSIASQVLDKAGFHFEDSDTKIRFIDLRKNLEAKAGFSKEDLK
SIRSIMKGGKVHRPTMANMMGMPPAPQTGGLEDYTRDLTALARAGQIEPVIGREAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVADGEVPASLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVAVGEPSVADSIAILQGLKKAYERYHKIQITDEAV
VTAVTFAKRYLTSKNLPDSAIDLLDEASATVQNQQKTSSQQSELSAVDKALMAGKHKTVSQLLVKELETESQEILGDAQV
TGEDVLLTLSRLSGIPVAKLSRTDVKRYLNLEAELHKRVIGQEVAISAVSRAIRRNQSGIRTGQRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYAVLLFDEVEKAHPDTFNILL
QVLDDGVLTDSKGRKVDFSNTLIIMTSNLGATALRDDKTVGFGALDLSHSHEHVEKRIFEELKKTYRPEFINRIDEKIVF
HSLSEQDMQEVVKVMIRPLEVVMNEKGIQFKVQPSALKLLAQEGYDREMGARPLRRLIQTKVEDPLAEMLLRGELQAEDT
LKIGVKAGKLNFDIGR

Nucleotide

• Length: 2451 bp

>NTDB_id=907997 SOL79_RS04770 WP_135029615.1 1104582..1107032(-) (clpC) [Streptococcus sp. VEG1o]
ATGAAATTTTCAAATGGATTACAGCGTGCCTATGAAGATGCGCAGTTAATCGGGCAACGGTATATGTGCGATTACTTAGA
AACCTGGCATCTATTGTTGGCTTTTGTTATCAATCCAGATACGATTGCAGGGGCTGTTTTGGCAGATTATCCATTCGATA
TTGCGGATTATGAACAGGCAACTTATAAGGTGACAGAACGTGTCTATCGTGAGAACTTAGAGGAGTTTACCTTTTTACAG
AGCTCGAAACGGCTTGATGAAGCAGCTCGTTTTGCTCAGAAGATTGCAGAAGTACTCAAGGCTAAACAGGTTGGGACTGA
GCATCTCTTCATGGCTATGCTCTTGGATAAGCGATCGATTGCCTCACAAGTTTTAGATAAGGCTGGATTTCATTTTGAGG
ATTCAGATACGAAGATTCGTTTCATTGATTTGCGGAAGAATTTAGAAGCGAAAGCTGGGTTCTCTAAGGAAGATTTGAAG
TCTATCCGTAGCATCATGAAAGGTGGTAAGGTTCATCGTCCAACCATGGCGAATATGATGGGGATGCCACCGGCTCCTCA
AACAGGTGGTTTGGAAGATTATACAAGGGATTTAACAGCCCTAGCGCGTGCAGGACAGATCGAGCCAGTCATTGGACGTG
AGGCTGAAATTTCTCGCATGATTCAGATTCTTTCCCGTAAAACCAAGAATAATCCGGTCTTGGTCGGAGATGCGGGTGTT
GGTAAAACGGCTCTTGCCCTGGGCTTGGCTCAAAGGGTAGCAGATGGGGAGGTACCAGCTAGCCTTGCCAAGATGCGGGT
GTTGGAGTTGGACTTGATGAATGTCATTGCAGGAACACGTTTTCGTGGAGATTTTGAAGAGCGGATGAACAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTGATTCTCTTCATTGATGAGCTCCATACCATTATGGGCTCTGGTAGCGGGATTGAC
TCAACCTTGGATGCGGCTAATATCTTGAAGCCAGCTCTGGCACGTGGAACCTTGCGGACGGTTGGGGCAACGACCCAAGA
GGAGTATCAAAAGCACATTGAAAAAGATGCGGCCCTCTCTCGTCGCTTTGCCAAGGTAGCGGTGGGAGAGCCCAGTGTCG
CAGATAGCATTGCCATTTTGCAGGGCTTGAAAAAAGCTTACGAACGCTATCATAAGATTCAGATTACAGATGAAGCGGTT
GTGACAGCTGTAACCTTTGCCAAGCGTTATTTGACCAGTAAAAATCTGCCAGATTCAGCGATTGACTTGCTGGACGAGGC
GAGTGCGACGGTACAAAATCAGCAAAAAACAAGTAGCCAGCAGTCTGAACTATCGGCAGTAGATAAGGCACTTATGGCTG
GAAAACATAAGACGGTCAGTCAATTATTGGTAAAGGAATTAGAAACAGAAAGTCAGGAGATTCTGGGTGATGCTCAAGTG
ACAGGAGAGGATGTGTTGCTGACGCTCAGTCGTTTGTCAGGTATTCCAGTAGCCAAGTTGAGCCGGACAGATGTGAAGAG
ATACTTGAATTTGGAAGCTGAATTGCACAAGCGAGTGATTGGGCAGGAAGTGGCTATTTCTGCGGTTAGTCGCGCTATTC
GTCGCAATCAATCAGGGATTCGTACCGGTCAGCGTCCGATTGGTTCTTTCATGTTTTTAGGTCCTACCGGGGTCGGAAAG
ACAGAATTAGCCAAGGCCTTAGCGGAGGTCTTATTTGACGACGAGTCGGCCCTCATTCGTTTTGATATGAGTGAGTATAT
GGAAAAATTTGCGGCCAGTCGTTTGAATGGTGCCCCTCCAGGCTATGTCGGCTATGAAGAGGGGGGAGAGCTGACAGAGA
AAGTACGTAATAAACCCTATGCAGTCTTGCTCTTTGATGAGGTGGAAAAAGCGCATCCTGATACCTTTAATATTCTCTTA
CAGGTTTTGGATGACGGTGTTTTGACAGATAGCAAGGGTCGGAAAGTTGATTTTTCAAATACCCTGATTATCATGACCTC
AAACCTTGGAGCAACAGCTTTAAGAGACGACAAGACAGTTGGTTTTGGAGCGCTTGATTTGTCGCATAGTCATGAGCATG
TTGAAAAACGAATTTTTGAAGAATTGAAAAAGACCTACCGACCAGAGTTTATTAACCGAATTGATGAAAAAATTGTTTTC
CATAGTTTGTCCGAACAGGATATGCAAGAAGTGGTGAAAGTGATGATTCGTCCGCTTGAAGTAGTCATGAATGAAAAAGG
GATTCAGTTCAAGGTTCAACCGTCAGCCTTGAAATTATTGGCCCAGGAAGGCTATGACCGTGAAATGGGAGCGCGACCAC
TCCGTCGCCTAATTCAAACGAAAGTGGAAGATCCATTAGCTGAAATGTTACTCCGTGGGGAACTTCAAGCAGAAGATACA
CTGAAAATTGGCGTAAAGGCTGGAAAATTGAACTTTGATATTGGTCGTTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (372-456)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-61)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (92-130)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-802)

• ATPase family associated with various cellular activities (AAA) (AAA) (233-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	70.343	100	0.703
clpC	Streptococcus pneumoniae Rx1	70.221	100	0.702
clpC	Streptococcus pneumoniae D39	70.221	100	0.702
clpC	Streptococcus thermophilus LMD-9	64.259	100	0.643
clpC	Streptococcus thermophilus LMG 18311	64.137	100	0.642
clpC	Streptococcus mutans UA159	64.373	99.755	0.642
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.038	100	0.5
clpC	Bacillus subtilis subsp. subtilis str. 168	42.702	100	0.434