Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SOL79_RS03345 Genome accession   NZ_CP139210
Coordinates   796603..797652 (-) Length   349 a.a.
NCBI ID   WP_135028711.1    Uniprot ID   -
Organism   Streptococcus sp. VEG1o     
Function   processing of CSP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 795737..796570 796603..797652 flank 33


Gene organization within MGE regions


Location: 795737..797652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOL79_RS03345 (SOL79_03345) sepM 796603..797652 (-) 1050 WP_135028711.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37898.22 Da        Isoelectric Point: 5.7355

>NTDB_id=907992 SOL79_RS03345 WP_135028711.1 796603..797652(-) (sepM) [Streptococcus sp. VEG1o]
MNQNKKLHLVFSIVVSTVLLWVALLFPLPYYIESPGGASDIRTVLTVDNQQDDKPGSYNFVYVQVKPATAVQLLFAAFDS
HSKIIPKEQLAGGADTEEFYRISQFYMETSQNMAKYQGLTLAKKETSLEFFGVYVLNVADDSTFKHILNIADTVVSVNGK
TFKSSPELIEYVSGLKLGSDVKVGYLSAGQARTADGKIIKLANGKNGIGIGLVDHTEVKSSEQIDFQTGNIGGPSAGLMF
TLAIYTQLADPDLRDGRMIAGTGTIEQDGSVGDIGGADKKVLSAAKAGARVFFVPNNPVDKEILKQKPDAKTNYEEAMEA
VKKDHLDIEVVPVTTVKDAIDYLKKTKSQ

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=907992 SOL79_RS03345 WP_135028711.1 796603..797652(-) (sepM) [Streptococcus sp. VEG1o]
ATGAATCAAAATAAAAAATTACATCTCGTTTTCTCGATTGTTGTGTCAACTGTCCTACTGTGGGTTGCGTTGCTGTTCCC
ACTTCCCTACTATATCGAAAGTCCTGGTGGTGCTTCGGATATCCGCACAGTATTGACAGTGGACAACCAGCAAGATGATA
AGCCTGGCTCTTATAATTTTGTCTATGTACAAGTCAAGCCAGCAACAGCCGTCCAGCTCTTATTTGCAGCTTTTGATTCC
CATTCAAAGATTATTCCCAAGGAACAGCTAGCAGGTGGTGCAGATACGGAGGAATTTTACCGCATCAGTCAATTCTACAT
GGAAACCTCGCAAAATATGGCCAAATACCAAGGCTTGACGTTGGCAAAGAAAGAGACATCTTTGGAATTTTTTGGAGTAT
ATGTCCTCAATGTAGCTGATGATTCCACCTTTAAGCATATTCTGAATATTGCTGATACAGTAGTAAGTGTTAACGGTAAA
ACTTTCAAGAGTTCTCCTGAATTGATTGAATATGTCAGTGGATTAAAACTTGGAAGCGATGTGAAAGTTGGTTATTTGAG
TGCTGGTCAAGCCAGGACTGCAGATGGAAAAATTATCAAGTTAGCAAATGGGAAGAATGGGATCGGGATTGGTCTCGTTG
ATCATACCGAGGTTAAAAGCAGTGAGCAGATTGATTTTCAGACGGGTAATATCGGAGGTCCGAGTGCAGGTTTGATGTTT
ACGCTCGCCATTTATACTCAGTTGGCAGATCCGGATTTGCGGGACGGTCGCATGATTGCGGGGACTGGAACGATTGAGCA
AGATGGTTCAGTCGGTGATATTGGTGGGGCAGATAAGAAAGTTTTATCTGCAGCGAAAGCAGGAGCAAGAGTTTTCTTTG
TGCCTAATAATCCTGTTGATAAAGAGATTTTGAAGCAAAAACCAGATGCTAAAACCAATTATGAAGAAGCGATGGAGGCC
GTAAAAAAAGATCATCTTGATATTGAAGTTGTACCTGTTACTACGGTCAAGGATGCTATTGACTATCTAAAGAAAACAAA
GAGCCAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

57.391

98.854

0.567