Detailed information NTG0907978

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SLQ83_RS17180
• Genome accession: NZ_CP139208
• Coordinates: 3569402..3570262 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152283.1
• Uniprot ID: A0A009QK25
• Organism: Acinetobacter baumannii strain HNNY86G
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3564402..3575262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SLQ83_RS17160 (SLQ83_17160)	secG	3565007..3565336 (-)	330	WP_000555569.1	preprotein translocase subunit SecG	-
SLQ83_RS17165 (SLQ83_17165)	tpiA	3565349..3566143 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
SLQ83_RS17170 (SLQ83_17170)	pilB	3566434..3568146 (+)	1713	WP_001274985.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SLQ83_RS17175 (SLQ83_17175)	pilC	3568176..3569402 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
SLQ83_RS17180 (SLQ83_17180)	pilD	3569402..3570262 (+)	861	WP_001152283.1	A24 family peptidase	Machinery gene
SLQ83_RS17185 (SLQ83_17185)	coaE	3570264..3570860 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
SLQ83_RS17190 (SLQ83_17190)	-	3570857..3571771 (-)	915	WP_000075011.1	DMT family transporter	-
SLQ83_RS17195 (SLQ83_17195)	rlmB	3571807..3572556 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SLQ83_RS17200 (SLQ83_17200)	-	3572658..3572984 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
SLQ83_RS17205 (SLQ83_17205)	-	3573061..3574371 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32144.59 Da
• Isoelectric Point: 7.1041

>NTDB_id=907978 SLQ83_RS17180 WP_001152283.1 3569402..3570262(+) (pilD) [Acinetobacter baumannii strain HNNY86G]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=907978 SLQ83_RS17180 WP_001152283.1 3569402..3570262(+) (pilD) [Acinetobacter baumannii strain HNNY86G]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A009QK25

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441