Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABN568_RS22025 Genome accession   NZ_CP158275
Coordinates   4543377..4543853 (+) Length   158 a.a.
NCBI ID   WP_021553055.1    Uniprot ID   -
Organism   Escherichia coli strain EC2257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4538377..4548853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN568_RS21995 (ABN568_21975) - 4538877..4539761 (+) 885 WP_001116795.1 YfjP family GTPase -
  ABN568_RS22000 (ABN568_21980) - 4539964..4540644 (+) 681 WP_029702103.1 WYL domain-containing protein -
  ABN568_RS22005 (ABN568_21985) - 4540792..4541469 (+) 678 WP_001097302.1 hypothetical protein -
  ABN568_RS22010 (ABN568_21990) - 4541475..4541708 (+) 234 WP_001278293.1 DUF905 family protein -
  ABN568_RS22015 (ABN568_21995) - 4541798..4542616 (+) 819 WP_001175165.1 DUF932 domain-containing protein -
  ABN568_RS22020 (ABN568_22000) - 4542882..4543361 (+) 480 WP_001564060.1 antirestriction protein -
  ABN568_RS22025 (ABN568_22005) radC 4543377..4543853 (+) 477 WP_021553055.1 RadC family protein Machinery gene
  ABN568_RS22030 (ABN568_22010) - 4543918..4544139 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABN568_RS22035 (ABN568_22015) - 4544302..4544670 (+) 369 WP_021553056.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABN568_RS22040 (ABN568_22020) - 4544760..4545137 (+) 378 WP_029701676.1 TA system toxin CbtA family protein -
  ABN568_RS22045 (ABN568_22025) - 4545134..4545283 (+) 150 Protein_4313 DUF5983 family protein -
  ABN568_RS22050 (ABN568_22030) - 4545362..4545556 (+) 195 WP_024181941.1 DUF957 domain-containing protein -
  ABN568_RS22055 (ABN568_22035) - 4545641..4546483 (+) 843 WP_022645115.1 DUF4942 domain-containing protein -
  ABN568_RS22060 (ABN568_22040) cadC 4547232..4548770 (+) 1539 WP_001187196.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=907970 ABN568_RS22025 WP_021553055.1 4543377..4543853(+) (radC) [Escherichia coli strain EC2257]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=907970 ABN568_RS22025 WP_021553055.1 4543377..4543853(+) (radC) [Escherichia coli strain EC2257]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399