Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SLQ83_RS16030 Genome accession   NZ_CP139208
Coordinates   3314511..3314921 (-) Length   136 a.a.
NCBI ID   WP_001200144.1    Uniprot ID   A0A6F8TJU0
Organism   Acinetobacter baumannii strain HNNY86G     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3309511..3319921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS16000 (SLQ83_16000) - 3309597..3309866 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SLQ83_RS16005 (SLQ83_16005) rapZ 3309863..3310714 (-) 852 WP_000821671.1 RNase adapter RapZ -
  SLQ83_RS16010 (SLQ83_16010) panC 3310737..3311585 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  SLQ83_RS16015 (SLQ83_16015) panB 3311589..3312398 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SLQ83_RS16020 (SLQ83_16020) folK 3312444..3312926 (-) 483 WP_000219224.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SLQ83_RS16025 (SLQ83_16025) pcnB 3312923..3314386 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  SLQ83_RS16030 (SLQ83_16030) comEA 3314511..3314921 (-) 411 WP_001200144.1 ComEA family DNA-binding protein Machinery gene
  SLQ83_RS16035 (SLQ83_16035) mazG 3314890..3315696 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  SLQ83_RS16040 (SLQ83_16040) - 3315808..3316581 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  SLQ83_RS16045 (SLQ83_16045) - 3316626..3318932 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15747.09 Da        Isoelectric Point: 10.4475

>NTDB_id=907970 SLQ83_RS16030 WP_001200144.1 3314511..3314921(-) (comEA) [Acinetobacter baumannii strain HNNY86G]
MQYSMRFWKNKYFILIMLCLGVVSPSVYAQSFDQNFQEWKAKQQMYDQKLKITKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=907970 SLQ83_RS16030 WP_001200144.1 3314511..3314921(-) (comEA) [Acinetobacter baumannii strain HNNY86G]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGAGTAGTTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAAGATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TJU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

93.382

100

0.934
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404