Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NC3_RS00590 Genome accession   NZ_AP025264
Coordinates   109356..110735 (+) Length   459 a.a.
NCBI ID   WP_017359160.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104356..115735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS00570 (NC3_00850) - 104698..105162 (+) 465 WP_035391577.1 CtsR family transcriptional regulator -
  NC3_RS00575 (NC3_00860) - 105177..105734 (+) 558 WP_007496258.1 UvrB/UvrC motif-containing protein -
  NC3_RS00580 (NC3_00870) - 105739..106830 (+) 1092 WP_008345444.1 protein arginine kinase -
  NC3_RS00585 (NC3_00880) clpC 106827..109262 (+) 2436 WP_007496263.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  NC3_RS00590 (NC3_00890) radA 109356..110735 (+) 1380 WP_017359160.1 DNA repair protein RadA Machinery gene
  NC3_RS00595 (NC3_00900) disA 110738..111817 (+) 1080 WP_007496267.1 DNA integrity scanning diadenylate cyclase DisA -
  NC3_RS00600 (NC3_00910) - 111971..113071 (+) 1101 WP_003217214.1 PIN/TRAM domain-containing protein -
  NC3_RS00605 (NC3_00920) ispD 113085..113774 (+) 690 WP_008345432.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NC3_RS00610 (NC3_00930) ispF 113778..114254 (+) 477 WP_007496273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49995.41 Da        Isoelectric Point: 7.1218

>NTDB_id=90797 NC3_RS00590 WP_017359160.1 109356..110735(+) (radA) [Bacillus altitudinis strain NC3]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=90797 NC3_RS00590 WP_017359160.1 109356..110735(+) (radA) [Bacillus altitudinis strain NC3]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCTGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCTGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTATACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGGGCGGACCGTCTCGGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTCGATTCAATTCAAACCGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACTGCGCAGCTGATGAAAATTGCCAAGACGAATGGTATTCCTATTTTTA
TTGTTGGTCATGTGACGAAGGAAGGCTCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTGGATACAGTTCTTTATTTT
GAAGGGGAGCGCCATCATACGTTTCGTATTTTACGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGGATTTT
TGAAATGAGGGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCGACGAGCTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTGCTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGTGGTGTGAAACTTGACGAACCAGCGATTGATTTGGCTA
TTGCCGTCAGCATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAACGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAATTAGTCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.118

99.782

0.869
  radA Streptococcus mitis NCTC 12261

61.81

98.693

0.61
  radA Streptococcus pneumoniae Rx1

61.81

98.693

0.61
  radA Streptococcus pneumoniae D39

61.81

98.693

0.61
  radA Streptococcus pneumoniae R6

61.81

98.693

0.61
  radA Streptococcus pneumoniae TIGR4

61.81

98.693

0.61
  radA Streptococcus mitis SK321

61.81

98.693

0.61

Multiple sequence alignment