Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABN568_RS09310 Genome accession   NZ_CP158275
Coordinates   1939169..1939645 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain EC2257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1934169..1944645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN568_RS09260 (ABN568_09255) sbmC 1934662..1935135 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  ABN568_RS09265 (ABN568_09260) yeeA 1935333..1936391 (+) 1059 WP_001200890.1 FUSC family protein -
  ABN568_RS09270 (ABN568_09265) tmaR 1936563..1936892 (+) 330 WP_000450409.1 DUF496 family protein -
  ABN568_RS09275 (ABN568_09270) - 1936993..1937175 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ABN568_RS09280 (ABN568_09275) - 1937229..1937375 (+) 147 Protein_1815 transposase domain-containing protein -
  ABN568_RS09285 (ABN568_09280) - 1937664..1937744 (-) 81 Protein_1816 hypothetical protein -
  ABN568_RS09290 (ABN568_09285) yeeW 1937790..1937984 (-) 195 WP_000988600.1 DUF5983 family protein -
  ABN568_RS09295 (ABN568_09290) cbtA 1937981..1938354 (-) 374 Protein_1818 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ABN568_RS09300 (ABN568_09295) cbeA 1938443..1938811 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ABN568_RS09305 (ABN568_09300) yeeT 1938885..1939106 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABN568_RS09310 (ABN568_09305) radC 1939169..1939645 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  ABN568_RS09315 (ABN568_09310) - 1939661..1940140 (-) 480 WP_001703514.1 antirestriction protein -
  ABN568_RS09320 (ABN568_09315) - 1940222..1941043 (-) 822 WP_021523139.1 DUF932 domain-containing protein -
  ABN568_RS09325 (ABN568_09320) - 1941264..1941674 (-) 411 WP_000846713.1 hypothetical protein -
  ABN568_RS09330 (ABN568_09325) - 1941690..1942373 (-) 684 WP_000775500.1 hypothetical protein -
  ABN568_RS09335 (ABN568_09330) - 1942509..1943579 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  ABN568_RS09340 (ABN568_09335) - 1943576..1944481 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=907940 ABN568_RS09310 WP_001186773.1 1939169..1939645(-) (radC) [Escherichia coli strain EC2257]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=907940 ABN568_RS09310 WP_001186773.1 1939169..1939645(-) (radC) [Escherichia coli strain EC2257]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392