Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SLP98_RS15385 Genome accession   NZ_CP139204
Coordinates   3296550..3297434 (-) Length   294 a.a.
NCBI ID   WP_114161188.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3291550..3302434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS15370 (SLP98_15370) miaB 3293397..3294848 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  SLP98_RS15375 (SLP98_15375) - 3294886..3295974 (+) 1089 WP_000122983.1 PhoH family protein -
  SLP98_RS15380 (SLP98_15380) ybeY 3295984..3296460 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  SLP98_RS15385 (SLP98_15385) tonB2 3296550..3297434 (-) 885 WP_114161188.1 energy transducer TonB Machinery gene
  SLP98_RS15390 (SLP98_15390) - 3297665..3298336 (+) 672 WP_001193957.1 hypothetical protein -
  SLP98_RS15395 (SLP98_15395) - 3298494..3299207 (+) 714 WP_114161189.1 DUF3108 domain-containing protein -
  SLP98_RS15400 (SLP98_15400) - 3299280..3299855 (+) 576 WP_042052232.1 xanthine phosphoribosyltransferase -
  SLP98_RS15405 (SLP98_15405) wrbA 3299908..3300501 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  SLP98_RS15410 (SLP98_15410) - 3300789..3302036 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33706.58 Da        Isoelectric Point: 9.0946

>NTDB_id=907923 SLP98_RS15385 WP_114161188.1 3296550..3297434(-) (tonB2) [Acinetobacter baumannii strain HNZZ130D]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFMLLIHFAMPTPSEQSTKEIAISIRPNEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQHRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=907923 SLP98_RS15385 WP_114161188.1 3296550..3297434(-) (tonB2) [Acinetobacter baumannii strain HNZZ130D]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTATGTTGCTCATCCATTTTGCGATGCCTACGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTAATGAAGATGTGATCAAGCATGCAGACTTCTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGTTAGA
AACTTTAGAAAAAGTGCAGCAACACAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAAGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.639

100

0.986