Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SLP98_RS01375 Genome accession   NZ_CP139204
Coordinates   289410..289736 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 284410..294736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS01350 (SLP98_01350) hemC 285027..285944 (+) 918 WP_031945328.1 hydroxymethylbilane synthase -
  SLP98_RS01355 (SLP98_01355) - 285949..286716 (+) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  SLP98_RS01360 (SLP98_01360) - 286725..287564 (+) 840 WP_001230210.1 hypothetical protein -
  SLP98_RS01365 (SLP98_01365) - 287574..288767 (+) 1194 WP_000681780.1 membrane protein -
  SLP98_RS01370 (SLP98_01370) - 288775..289215 (+) 441 WP_000661569.1 thioesterase family protein -
  SLP98_RS01375 (SLP98_01375) hns 289410..289736 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SLP98_RS01380 (SLP98_01380) gspN 290068..290811 (+) 744 WP_000730343.1 type II secretion system protein N -
  SLP98_RS01385 (SLP98_01385) - 290811..291647 (+) 837 WP_020752740.1 type II secretion system protein N -
  SLP98_RS01390 (SLP98_01390) gspD 291689..293965 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  SLP98_RS01395 (SLP98_01395) - 294006..294635 (+) 630 WP_000219964.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=907900 SLP98_RS01375 WP_000801427.1 289410..289736(+) (hns) [Acinetobacter baumannii strain HNZZ130D]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=907900 SLP98_RS01375 WP_000801427.1 289410..289736(+) (hns) [Acinetobacter baumannii strain HNZZ130D]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1