Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SLH34_RS20880 Genome accession   NZ_CP139203
Coordinates   4523051..4524493 (+) Length   480 a.a.
NCBI ID   WP_320564676.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain DDA01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4518051..4529493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLH34_RS20865 (SLH34_20865) leuA 4519133..4520842 (-) 1710 WP_006386984.1 2-isopropylmalate synthase -
  SLH34_RS20870 (SLH34_20870) - 4521233..4522210 (-) 978 WP_006386985.1 tripartite tricarboxylate transporter substrate binding protein -
  SLH34_RS20875 (SLH34_20875) - 4522402..4523052 (-) 651 WP_024067398.1 hypothetical protein -
  SLH34_RS20880 (SLH34_20880) rpoN/rpoN1 4523051..4524493 (+) 1443 WP_320564676.1 RNA polymerase factor sigma-54 Machinery gene
  SLH34_RS20885 (SLH34_20885) - 4524587..4524793 (+) 207 WP_320564677.1 stability determinant -
  SLH34_RS20890 (SLH34_20890) - 4524862..4525140 (+) 279 WP_006386989.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SLH34_RS20895 (SLH34_20895) - 4525319..4525618 (+) 300 WP_006386990.1 bacterioferritin-associated ferredoxin -
  SLH34_RS20900 (SLH34_20900) - 4525588..4526508 (-) 921 WP_054482351.1 LysR substrate-binding domain-containing protein -
  SLH34_RS20905 (SLH34_20905) - 4526622..4527536 (+) 915 WP_024067401.1 DMT family transporter -
  SLH34_RS20910 (SLH34_20910) bfr 4527961..4528437 (+) 477 WP_006386993.1 bacterioferritin -
  SLH34_RS20915 (SLH34_20915) - 4528522..4529220 (-) 699 WP_026384932.1 hypothetical protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 52417.81 Da        Isoelectric Point: 4.9263

>NTDB_id=907884 SLH34_RS20880 WP_320564676.1 4523051..4524493(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain DDA01]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPASVEAQAESERESSVQDDEP
APERDTPVEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSECLLLQLRNPDTARLPEAADPKALACARLVCAQHLALLATGNHARLCAA
VGCDEATLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLANQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAHIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELK
RFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAAR

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=907884 SLH34_RS20880 WP_320564676.1 4523051..4524493(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain DDA01]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTGACGCTGACCCCTCAACTGCA
GCAATCGATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCCGACAATCCGTTGC
TGGAACGCGACGATGAGCCTGCCTCCGTCGAGGCGCAGGCCGAATCCGAGCGCGAGTCGTCGGTGCAGGACGACGAACCC
GCGCCCGAGCGCGACACCCCGGTCGAGGAAATGCCGGGTTCGGGCGGGGTCTACCCCGATGATGATTCCAGCCTGCCCGA
GGCCGCCCGGCCCGATACCCTGCGCGAGCACCTGCTCGGGCAACTGGTGCTGACCCGCGCCGCGCCGCGCGACGCCGCGC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGCTCGCCCCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAGCTGCGCGCCGCGCTGTCGCTGCTGCAATCGTTCGACCCGGCCGGCATCGGCGC
GCGCGACATGTCCGAGTGCCTGCTGTTGCAATTGCGCAATCCCGACACGGCCCGGTTGCCCGAGGCCGCGGATCCCAAGG
CGCTGGCCTGCGCCCGCCTGGTCTGCGCCCAGCATCTGGCGCTGTTGGCCACCGGCAACCATGCCAGGCTGTGCGCCGCG
GTCGGTTGTGACGAGGCCACGCTGCGCGCGGCGCACGCCCTGATCCTGCGTCTGGAGCCCCGTCCGGGCCGCGCCTGGAC
GGTCCCGGCGGCCGATTACGCCGTGCCCGACGTCATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGACTGCAGATCAATGGCCTGTACGCCCAAATGCTGGCCAACCAGAAGGAGTCGGCCCACGCCGGCTTG
CAGTCTCAGCTGCAACAGGCGAAATGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCACAT
TGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGCCCGCTCATCCTCAAGGACATTGCCGGCGAGC
TGGGCCTGCATGAGTCCACCATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCCTTCGGTACGCTGGAGCTCAAG
CGCTTCTTCGGGGCGGGGGTGTCGACCGATGGCGGCGACGCCACATCCGCCACGGCGGTGCAGACTTTCATCCGCCAGAT
GGTGGCCGAGGAGAACCGGGCCAAGCCGCTGTCCGACAGCCAGATCATGGAAAAACTGGCCGACCAGGGCATCGTCATCG
CCCGCAGGACGGTCGCGAAATACCGCGAGGCACTGCGGATCGCGCCGGCCGCGCTGCGCAAGGCGCAGGCCGCGGCGCGG
TGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-474)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.509

100

0.508