Detailed information NTG0907843

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRY30_RS05405
• Genome accession: NZ_CP158187
• Coordinates: 1109893..1110885 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC0900
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1104893..1115885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRY30_RS05375 (ABRY30_05375)	ispD	1104954..1105664 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRY30_RS05380 (ABRY30_05380)	ispF	1105664..1106143 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRY30_RS05385 (ABRY30_05385)	truD	1106140..1107189 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRY30_RS05390 (ABRY30_05390)	surE	1107170..1107931 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRY30_RS05395 (ABRY30_05395)	pcm	1107925..1108551 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRY30_RS05400 (ABRY30_05400)	nlpD	1108736..1109830 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRY30_RS05405 (ABRY30_05405)	rpoS	1109893..1110885 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRY30_RS05410 (ABRY30_05410)	ygbN	1110979..1112343 (-)	1365	WP_000104441.1	GntP family transporter	-
ABRY30_RS05415 (ABRY30_05415)	ygbM	1112432..1113208 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRY30_RS05420 (ABRY30_05420)	ygbL	1113213..1113851 (-)	639	WP_001278994.1	aldolase	-
ABRY30_RS05425 (ABRY30_05425)	otnK	1113848..1115110 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=907843 ABRY30_RS05405 WP_000081550.1 1109893..1110885(+) (rpoS) [Escherichia coli strain EC0900]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=907843 ABRY30_RS05405 WP_000081550.1 1109893..1110885(+) (rpoS) [Escherichia coli strain EC0900]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715