Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SKN87_RS12520 Genome accession   NZ_CP139198
Coordinates   2718995..2720764 (+) Length   589 a.a.
NCBI ID   WP_013371191.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain C2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713995..2725764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKN87_RS12490 (SKN87_12490) - 2714482..2715285 (+) 804 WP_013371186.1 AAA family ATPase -
  SKN87_RS12495 (SKN87_12495) - 2715614..2715868 (+) 255 WP_013371187.1 dCTP deaminase domain-containing protein -
  SKN87_RS12500 (SKN87_12500) rpsN 2715899..2716168 (+) 270 WP_013371188.1 30S ribosomal protein S14 -
  SKN87_RS12505 (SKN87_12505) - 2716446..2717456 (+) 1011 WP_013371189.1 CobW family GTP-binding protein -
  SKN87_RS12510 (SKN87_12510) - 2717485..2718277 (+) 793 Protein_2415 GTP cyclohydrolase, FolE2/MptA family -
  SKN87_RS12515 (SKN87_12515) - 2718508..2718915 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  SKN87_RS12520 (SKN87_12520) rcrP 2718995..2720764 (+) 1770 WP_013371191.1 ABC transporter ATP-binding protein Regulator
  SKN87_RS12525 (SKN87_12525) rcrQ 2720751..2722601 (+) 1851 WP_013371192.1 ABC transporter ATP-binding protein Regulator
  SKN87_RS12535 (SKN87_12535) - 2723495..2724385 (+) 891 WP_013371196.1 zinc-binding dehydrogenase -
  SKN87_RS12540 (SKN87_12540) trxA 2724515..2724832 (+) 318 WP_013371197.1 thioredoxin -
  SKN87_RS12545 (SKN87_12545) - 2724954..2725724 (+) 771 WP_013371198.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65085.38 Da        Isoelectric Point: 7.0453

>NTDB_id=907838 SKN87_RS12520 WP_013371191.1 2718995..2720764(+) (rcrP) [Paenibacillus polymyxa strain C2]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGTYLINGAAVPDRVTLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEVSEKLVKAAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRVLRSALKQETGHATTLIVAQRIGTIKDTDRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=907838 SKN87_RS12520 WP_013371191.1 2718995..2720764(+) (rcrP) [Paenibacillus polymyxa strain C2]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACCGCAGGAACGCCGATGTCGGAAC
TGTTAATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGACAGGCCAATGCAGAATTGACAAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGTCCGGGGATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCACATACCTGATTAACGGAGC
GGCCGTGCCGGACCGCGTTACGCTATTCTCTAATATGGTCGTATTCTCCTCATATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCTCGCATCATCGACGGACATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTTCGTAATGTCAGCTTCAA
ATATCCGGATGCCGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAGGGCGAGACGGTTGCCTTTATTGGTG
CAACAGGCAGCGGCAAAACCAGTGTGATCAATCTGATTTCCCGTTTCTACGATGTGACTGAGGGTGAGGTACTTGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCTTCCAACGTTTCGTATGGCGATAACGGAAGAGCAGAAGTTTCGGAGAAACTCGTCAAAGCCGCTGTGG
AGATTGCCCAGGGTACGGAGTTTGTCGAAAAAATGGACGGTCAATATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCAGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCAGAGATTTACATCTTCGATGATTCCTT
CTCGGCACTCGACTACAGAACAGACCGGGTCCTGCGCTCTGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TGGCTCAGCGCATAGGCACCATTAAGGACACTGACCGGATTATTGTTCTCGACCAGGGCGAGATTGTAGGAAACGGCACA
CATGAAGAGCTGATGGCGAATTGCAGCACCTATCAAGAAATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.5

100

0.525