Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SK066_RS14945 Genome accession   NZ_CP139194
Coordinates   3686703..3687104 (-) Length   133 a.a.
NCBI ID   WP_373289153.1    Uniprot ID   -
Organism   Paenibacillus hunanensis strain Y9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3681703..3692104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK066_RS14925 (SK066_14925) - 3682564..3683169 (+) 606 WP_188776594.1 TetR/AcrR family transcriptional regulator -
  SK066_RS14930 (SK066_14930) - 3683312..3684550 (+) 1239 WP_320542073.1 MFS transporter -
  SK066_RS14935 (SK066_14935) - 3684888..3685829 (-) 942 WP_320542074.1 YafY family protein -
  SK066_RS14940 (SK066_14940) - 3685931..3686470 (+) 540 WP_320542075.1 VOC family protein -
  SK066_RS14945 (SK066_14945) nucA/comI 3686703..3687104 (-) 402 WP_373289153.1 sporulation protein Machinery gene
  SK066_RS14950 (SK066_14950) - 3687688..3687864 (+) 177 WP_188776591.1 YjfB family protein -
  SK066_RS14955 (SK066_14955) - 3688159..3688644 (-) 486 WP_320542076.1 hypothetical protein -
  SK066_RS14960 (SK066_14960) - 3688790..3689974 (-) 1185 WP_320542077.1 acyl-CoA dehydrogenase family protein -
  SK066_RS14965 (SK066_14965) - 3690185..3690607 (-) 423 WP_320542078.1 SMI1/KNR4 family protein -
  SK066_RS14970 (SK066_14970) - 3690825..3691247 (-) 423 WP_320542079.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14447.03 Da        Isoelectric Point: 4.8667

>NTDB_id=907785 SK066_RS14945 WP_373289153.1 3686703..3687104(-) (nucA/comI) [Paenibacillus hunanensis strain Y9]
MLVVLLTTPALLQGENNGSQAYAAAAYDYTLTFPSSRYPETASHIRDAIADGHSAVCTIDRSGADERREESLKGVPTKSG
YDRDEWPMAMCLEGGQGADIRYITPSDNRGAGSWVGNQLTKYPDGTRVKFIVN

Nucleotide


Download         Length: 402 bp        

>NTDB_id=907785 SK066_RS14945 WP_373289153.1 3686703..3687104(-) (nucA/comI) [Paenibacillus hunanensis strain Y9]
ATGCTGGTGGTGCTATTGACGACACCAGCGCTGCTACAAGGTGAAAATAATGGATCTCAGGCTTATGCAGCAGCTGCGTA
TGACTATACCCTGACCTTCCCATCCAGTCGCTATCCTGAAACTGCCTCTCATATTCGAGATGCGATTGCAGATGGTCACT
CTGCCGTATGTACGATCGATCGCTCTGGTGCAGATGAGCGCCGCGAGGAATCGCTAAAAGGCGTACCAACGAAAAGCGGC
TATGATCGTGATGAATGGCCGATGGCAATGTGTCTTGAAGGCGGCCAAGGTGCAGACATCCGTTACATAACACCATCGGA
TAACCGTGGCGCTGGTTCCTGGGTCGGTAATCAGCTCACCAAATATCCAGATGGTACACGAGTGAAATTTATCGTGAACT
AA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(35-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.963

80.451

0.579