Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   SK061_RS17505 Genome accession   NZ_CP139190
Coordinates   3370585..3371319 (-) Length   244 a.a.
NCBI ID   WP_006637859.1    Uniprot ID   M5P6X3
Organism   Bacillus sonorensis strain PMC204     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365585..3376319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS17475 (SK061_17475) - 3365631..3365858 (-) 228 WP_048406483.1 helix-turn-helix domain-containing protein -
  SK061_RS17480 (SK061_17480) - 3366071..3366727 (+) 657 WP_231592202.1 LexA family transcriptional regulator -
  SK061_RS17485 (SK061_17485) - 3366788..3368179 (+) 1392 WP_048406484.1 recombinase family protein -
  SK061_RS17490 (SK061_17490) - 3368195..3368578 (-) 384 Protein_3425 UPF0758 domain-containing protein -
  SK061_RS17495 (SK061_17495) - 3368633..3369205 (-) 573 WP_006637857.1 nucleoside triphosphate pyrophosphatase -
  SK061_RS17500 (SK061_17500) - 3369356..3370387 (-) 1032 WP_006637858.1 SPOR domain-containing protein -
  SK061_RS17505 (SK061_17505) comC 3370585..3371319 (-) 735 WP_006637859.1 A24 family peptidase Machinery gene
  SK061_RS17510 (SK061_17510) - 3371467..3372765 (-) 1299 WP_006637860.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SK061_RS17515 (SK061_17515) - 3372840..3375482 (-) 2643 WP_006637861.1 valine--tRNA ligase -
  SK061_RS17520 (SK061_17520) - 3375937..3376128 (+) 192 WP_006637862.1 hypothetical protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26217.92 Da        Isoelectric Point: 8.7885

>NTDB_id=907745 SK061_RS17505 WP_006637859.1 3370585..3371319(-) (comC) [Bacillus sonorensis strain PMC204]
MYLFIFGLVLGSFFNVAGRRIPENTSLIAPRSACPDCCRPLTFLELIPVLSYILQRGKCRGCKRPVSIVYPAVELAAALL
FAFAYLRIGDPGELVIALFLISLLLIVFVSDVMYMVIPDAVLCFFLPVFAAGRILFPLEPWHSSLTGAIAGCLLPLVAAV
MTKGGIGGGDVKLFAVLGIVLGVRQILLVFVLSAAAGMVMGFAAMLAGKLKRREPLPFAPAILIGTLTGYFYGDPLIGLY
IQMI

Nucleotide


Download         Length: 735 bp        

>NTDB_id=907745 SK061_RS17505 WP_006637859.1 3370585..3371319(-) (comC) [Bacillus sonorensis strain PMC204]
ATGTATTTATTTATATTCGGTTTAGTGCTCGGTTCTTTTTTTAATGTGGCCGGCCGCCGCATACCCGAGAACACCTCTTT
GATCGCTCCCCGCTCCGCCTGCCCTGACTGCTGCCGCCCGCTCACTTTTCTTGAACTGATTCCGGTGTTGTCCTATATAT
TGCAGAGGGGAAAATGCAGGGGATGCAAACGGCCTGTTTCCATCGTGTATCCGGCCGTTGAGCTTGCGGCGGCATTGCTG
TTTGCCTTTGCCTATTTAAGGATTGGCGATCCCGGAGAGCTTGTCATCGCGCTTTTCCTCATTTCTTTATTGCTTATCGT
GTTTGTCTCAGATGTGATGTATATGGTCATACCTGATGCCGTCCTTTGTTTTTTTCTGCCTGTTTTTGCCGCCGGGCGCA
TCCTGTTCCCGCTTGAGCCTTGGCATTCAAGCTTAACTGGAGCGATTGCCGGTTGTCTGCTGCCGCTTGTTGCGGCTGTG
ATGACGAAAGGCGGCATCGGCGGGGGAGATGTAAAGCTGTTTGCCGTTCTTGGCATCGTCCTCGGGGTTCGCCAGATTTT
GCTCGTATTCGTTCTGTCTGCGGCTGCCGGAATGGTGATGGGTTTCGCGGCGATGCTGGCTGGGAAGCTAAAACGAAGAG
AGCCATTGCCATTTGCGCCCGCCATTTTGATCGGAACATTGACAGGCTATTTTTATGGCGACCCGCTGATCGGCTTATAC
ATTCAGATGATATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(5-87)

Type IV leader peptidase family (Peptidase_A24)

(98-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P6X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

53.112

98.77

0.525