Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABRY29_RS01345 Genome accession   NZ_CP158182
Coordinates   258586..259242 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain EC0885     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 253586..264242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRY29_RS01310 (ABRY29_01310) dcyD 254465..255451 (+) 987 WP_001724631.1 D-cysteine desulfhydrase -
  ABRY29_RS01315 (ABRY29_01315) tcyL 255466..256134 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABRY29_RS01320 (ABRY29_01320) tcyN 256131..256883 (+) 753 WP_024237213.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABRY29_RS01325 (ABRY29_01325) sdiA 257113..257835 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  ABRY29_RS01330 (ABRY29_01330) yecF 257903..258127 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABRY29_RS01335 (ABRY29_01335) yecU 258114..258290 (-) 177 WP_000590344.1 protein YecU -
  ABRY29_RS01340 (ABRY29_01340) - 258328..258444 (-) 117 WP_001302039.1 hypothetical protein -
  ABRY29_RS01345 (ABRY29_01345) letA 258586..259242 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABRY29_RS01350 (ABRY29_01350) uvrC 259239..261071 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABRY29_RS01355 (ABRY29_01355) pgsA 261128..261676 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABRY29_RS01375 (ABRY29_01375) yecA 262326..262991 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=907745 ABRY29_RS01345 WP_000611335.1 258586..259242(+) (letA) [Escherichia coli strain EC0885]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=907745 ABRY29_RS01345 WP_000611335.1 258586..259242(+) (letA) [Escherichia coli strain EC0885]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486