Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   SK061_RS08675 Genome accession   NZ_CP139190
Coordinates   1685607..1686068 (-) Length   153 a.a.
NCBI ID   WP_006638395.1    Uniprot ID   M5P514
Organism   Bacillus sonorensis strain PMC204     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680607..1691068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS08650 (SK061_08650) - 1680981..1682161 (-) 1181 Protein_1659 aminotransferase A -
  SK061_RS08655 (SK061_08655) - 1682350..1682508 (-) 159 WP_006638399.1 hypothetical protein -
  SK061_RS08660 (SK061_08660) - 1682679..1683200 (+) 522 WP_006638398.1 RDD family protein -
  SK061_RS08665 (SK061_08665) - 1683280..1684596 (+) 1317 WP_006638397.1 MFS transporter -
  SK061_RS08670 (SK061_08670) - 1684659..1685579 (+) 921 WP_006638396.1 chemotaxis protein -
  SK061_RS08675 (SK061_08675) kre 1685607..1686068 (-) 462 WP_006638395.1 YkyB family protein Regulator
  SK061_RS08680 (SK061_08680) - 1686208..1687509 (-) 1302 WP_006638394.1 MFS transporter -
  SK061_RS08685 (SK061_08685) - 1687594..1688088 (-) 495 WP_081605382.1 L,D-transpeptidase family protein -
  SK061_RS08690 (SK061_08690) - 1688270..1689133 (-) 864 WP_006638392.1 metallophosphoesterase -
  SK061_RS08695 (SK061_08695) fadH 1689277..1690041 (+) 765 WP_006638391.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17621.37 Da        Isoelectric Point: 10.5181

>NTDB_id=907722 SK061_RS08675 WP_006638395.1 1685607..1686068(-) (kre) [Bacillus sonorensis strain PMC204]
MDDHNHTKELKPTIENLSKAIYTVNRHAKTATDPKYLYLLKKKALQKLINEGKGKKVGLHFSKNPKFSQQQSDVLISLGD
YFFHMPPTKEDFDNLPHLGTLNHSYRNPKAHMSLNIAKQLLQNYTGLKEKPLVTNRKRSSAKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=907722 SK061_RS08675 WP_006638395.1 1685607..1686068(-) (kre) [Bacillus sonorensis strain PMC204]
ATGGACGACCATAATCATACTAAAGAATTAAAACCAACCATCGAAAACCTTTCAAAAGCGATTTACACGGTCAATCGTCA
TGCTAAAACCGCGACCGATCCCAAATACCTGTATCTCCTGAAAAAGAAAGCTTTACAAAAGCTCATCAATGAAGGAAAAG
GTAAAAAGGTAGGACTTCACTTTTCGAAAAACCCAAAATTCAGCCAGCAACAGTCAGATGTGCTCATTTCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACCAAAGAAGACTTCGATAACCTTCCGCACTTAGGTACACTAAATCATTCTTATCGGAA
TCCAAAAGCTCATATGTCATTGAACATAGCGAAGCAGCTGCTTCAAAACTACACGGGATTGAAGGAGAAGCCGCTCGTCA
CGAACCGAAAGCGCTCTTCTGCAAAGCCTGTATTCAAGAAGCTTGGCGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P514

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

79.221

100

0.797