Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SK061_RS07350 Genome accession   NZ_CP139190
Coordinates   1441464..1443284 (+) Length   606 a.a.
NCBI ID   WP_006636842.1    Uniprot ID   -
Organism   Bacillus sonorensis strain PMC204     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436464..1448284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS07320 (SK061_07320) - 1437163..1437741 (+) 579 WP_006636837.1 GNAT family N-acetyltransferase -
  SK061_RS07325 (SK061_07325) spxA 1437919..1438314 (+) 396 WP_006636838.1 transcriptional regulator SpxA -
  SK061_RS07330 (SK061_07330) - 1438347..1439009 (-) 663 WP_006636839.1 TerC family protein -
  SK061_RS07335 (SK061_07335) - 1439178..1439303 (+) 126 Protein_1398 hypothetical protein -
  SK061_RS07340 (SK061_07340) mecA 1439285..1439923 (+) 639 WP_006636840.1 adaptor protein MecA Regulator
  SK061_RS07345 (SK061_07345) - 1440102..1441250 (+) 1149 WP_006636841.1 competence protein CoiA family protein -
  SK061_RS07350 (SK061_07350) pepF 1441464..1443284 (+) 1821 WP_006636842.1 oligoendopeptidase F Regulator
  SK061_RS07355 (SK061_07355) - 1443360..1443527 (-) 168 WP_006636843.1 hypothetical protein -
  SK061_RS07360 (SK061_07360) spxH 1443938..1444771 (-) 834 WP_373870167.1 protease adaptor protein SpxH -
  SK061_RS07365 (SK061_07365) - 1444828..1445226 (-) 399 WP_006636845.1 hemoglobin YjbI -
  SK061_RS07370 (SK061_07370) - 1445514..1446185 (-) 672 WP_006636846.1 lytic transglycosylase domain-containing protein -
  SK061_RS07375 (SK061_07375) - 1446198..1446770 (-) 573 WP_006636847.1 CYTH domain-containing protein -
  SK061_RS07380 (SK061_07380) - 1446894..1447259 (+) 366 WP_006636848.1 hypothetical protein -
  SK061_RS07385 (SK061_07385) - 1447290..1447925 (+) 636 WP_006636849.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69953.53 Da        Isoelectric Point: 4.8718

>NTDB_id=907719 SK061_RS07350 WP_006636842.1 1441464..1443284(+) (pepF) [Bacillus sonorensis strain PMC204]
MAEENQTKKLPARDEVKQEDTWRLEDIFPSDEAWNEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKASNLYTQAASATAYMVPEILSIQEDKLQQFLLEKEELKLYSHALEEINKERPHVLSEQ
EEGLLAEASDVLSSPSTTFGMLNNADMEFPEITDENGEKRQITHGNYITFLESENRDVRRDAFKAVYDTYGRFKNTLAST
LSGAIKKDNFYAKVKHYQSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYGQAKDYMIKGLAPLGEEYTSILKEGLNNRWVDVYENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGDYLLNTVDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHAIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGENIEIDKEIGLEWARIPHFYYNYYVYQYATGYSAAQALSQQILKEGKPAVDRYIDFL
KAGSSDYPIEVLKKAGVDMTTSDPIEAACKKFEEQLNEMEELLLKK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=907719 SK061_RS07350 WP_006636842.1 1441464..1443284(+) (pepF) [Bacillus sonorensis strain PMC204]
GTGGCTGAAGAAAACCAAACGAAAAAACTGCCTGCAAGAGATGAGGTGAAGCAAGAGGACACGTGGAGACTCGAGGATAT
CTTTCCATCTGATGAAGCCTGGAATGAGGAATTTCAAGCGGTTAAAGAGCTGCTGCCTAAGCTCTCCGAATTTAAGGGAA
GGCTCGGCCATTCCGCCGACGATTTATATGAAGCATTGACATATCAGGACAAGGTCATGGAAAGGCTCGGGAAGCTGTAT
ACTTACGCTCATATGCGCTATGATCAGGATACAGGCAATTCATTTTATCAGGGTCTGAATGATAAAGCCTCCAACCTTTA
TACACAGGCTGCCAGCGCGACAGCTTATATGGTGCCGGAGATTTTATCGATACAGGAAGACAAGCTTCAGCAGTTCCTTT
TAGAAAAAGAGGAACTAAAGCTCTACTCGCATGCGCTTGAAGAAATCAACAAAGAGCGGCCCCACGTGTTGAGCGAACAG
GAAGAAGGGCTGCTCGCAGAGGCGTCAGATGTTCTGTCATCTCCGTCCACAACATTCGGCATGCTCAACAACGCCGATAT
GGAATTTCCGGAAATCACCGATGAGAACGGGGAAAAACGCCAGATCACACACGGAAACTACATCACCTTTTTGGAAAGCG
AGAACCGCGACGTCCGCCGCGACGCATTCAAAGCTGTGTATGATACGTACGGCCGCTTTAAAAACACGCTTGCATCAACG
CTCAGCGGCGCCATCAAAAAAGATAATTTTTATGCAAAGGTTAAACATTATCAATCGGCCAGGGAAGCGGCCCTGTCGCG
CAACAGCATTCCCGAAGAGGTCTATGATAATCTCGTCAGCACGATCAATAAACACCTGCCGCTTCTTCACCGCTATGTTG
AGCTCAGAAAAAAAGTGCTCGAACTTGATGAAGTGCACATGTATGACCTCTACACGCCGCTTGTAAAAGATTCCGGCATG
AAAGTGACGTACGGGCAGGCGAAAGATTACATGATCAAAGGGCTCGCTCCTTTGGGTGAAGAATATACATCCATCCTCAA
AGAGGGGTTAAACAACCGCTGGGTTGATGTATATGAGAACAAAGGAAAACGGAGCGGGGCTTATTCTTCAGGCGCATACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTTAACAACCTGTTCACGCTTGTCCATGAATTCGGCCATTCC
GTCCACAGTTATTATACGAGAAAGCATCAGCCGTATCCGTACGGGAACTACAGCATCTTTGTCGCTGAAGTGGCTTCAAC
GACAAATGAGGCCCTTCTGGGGGACTATCTGCTGAACACGGTCGATGATGAAAAACAACGCCTTTATATTTTAAACCATA
TGCTTGAAGGGTTTAAAGGGACGGTTTTCAGACAAACGATGTTTGCCGAATTTGAACATGCGATTCATGTCAAAGCCCAA
GAAGGCGAGCCGCTTACACCTGAACTTTTAACGAGCATCTATTATGATTTAAACAAAAAGTACTTCGGAGAAAATATTGA
AATTGACAAAGAAATCGGTCTTGAATGGGCGAGAATCCCTCATTTCTACTACAATTATTATGTATATCAATATGCGACAG
GCTACAGCGCCGCCCAGGCCTTGAGCCAGCAGATTTTAAAGGAAGGGAAGCCGGCGGTTGACCGCTACATCGACTTCCTG
AAAGCCGGAAGCTCTGATTACCCGATTGAAGTGCTCAAAAAAGCGGGAGTCGACATGACGACTTCAGATCCGATCGAAGC
TGCATGCAAAAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAGCTCCTGCTAAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.759

97.855

0.497