Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SK061_RS06760 Genome accession   NZ_CP139190
Coordinates   1314527..1315108 (+) Length   193 a.a.
NCBI ID   WP_006636726.1    Uniprot ID   M5PH60
Organism   Bacillus sonorensis strain PMC204     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309527..1320108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS06735 (SK061_06735) - 1309846..1309967 (-) 122 Protein_1277 acetyl-CoA C-acyltransferase -
  SK061_RS25055 - 1310035..1310541 (-) 507 WP_373870165.1 methyl-accepting chemotaxis protein -
  SK061_RS25060 - 1310794..1311384 (-) 591 Protein_1279 protoglobin family protein -
  SK061_RS06745 (SK061_06745) - 1311432..1312961 (-) 1530 WP_006636723.1 FAD-dependent oxidoreductase -
  SK061_RS06750 (SK061_06750) - 1313096..1313953 (+) 858 WP_006636724.1 SDR family oxidoreductase -
  SK061_RS06755 (SK061_06755) - 1314022..1314255 (-) 234 WP_006636725.1 IDEAL domain-containing protein -
  SK061_RS06760 (SK061_06760) comK 1314527..1315108 (+) 582 WP_006636726.1 competence protein ComK Regulator
  SK061_RS06765 (SK061_06765) - 1315102..1315467 (-) 366 WP_006636727.1 hypothetical protein -
  SK061_RS06770 (SK061_06770) - 1315698..1316306 (+) 609 WP_006636728.1 TVP38/TMEM64 family protein -
  SK061_RS06775 (SK061_06775) lepB 1316319..1316834 (+) 516 WP_006636729.1 signal peptidase I -
  SK061_RS06780 (SK061_06780) - 1316991..1318752 (-) 1762 Protein_1287 S8 family serine peptidase -
  SK061_RS06785 (SK061_06785) - 1319331..1319558 (+) 228 WP_123032305.1 JAB domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22585.72 Da        Isoelectric Point: 9.4506

>NTDB_id=907711 SK061_RS06760 WP_006636726.1 1314527..1315108(+) (comK) [Bacillus sonorensis strain PMC204]
MSNTEDMTRDSYEVNSSTMAVLPLDEGKKPASKVIETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSISSFENQVYRTAWLRTKFLDRIEG
SAVQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=907711 SK061_RS06760 WP_006636726.1 1314527..1315108(+) (comK) [Bacillus sonorensis strain PMC204]
ATGAGCAATACCGAAGATATGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTGCTGCCTCTTGATGAGGG
GAAAAAGCCCGCTTCAAAAGTAATTGAAACCGACAGGACATTTCGGGTCAATATGAGGCCCTTCCAAATTATAGAGAGAA
GCTGCCGCTATTTCGGCTCAAGCTATGCGGGAAGAAAAGCCGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCAACAAGGCCTCAATGCGGGTGGCTTTCACA
TGCGCACGTTCATGAATTCCGTGCGGCAAAGTATGACAACACATTCGTCACGTTTGTAAATGGCGAATCTTTGGAGCTGC
CGGTTTCCATCTCATCTTTTGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACCAAGTTTCTCGATCGGATTGAAGGA
AGCGCCGTGCAGAAAAAACAGGAATTTATGCTGTATCCAAAGGAAGACCGGAACCAGCTGATATATGAATTCATCCTCAG
GGAGCTGAAAAAACGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.876

100

0.679