Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SK061_RS05115 Genome accession   NZ_CP139190
Coordinates   1030093..1030884 (+) Length   263 a.a.
NCBI ID   WP_006639866.1    Uniprot ID   -
Organism   Bacillus sonorensis strain PMC204     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025093..1035884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS05085 (SK061_05085) - 1026252..1027151 (+) 900 WP_006639872.1 PhzF family phenazine biosynthesis isomerase -
  SK061_RS05090 (SK061_05090) - 1027270..1027854 (+) 585 WP_006639871.1 nitroreductase -
  SK061_RS05095 (SK061_05095) - 1027889..1028083 (-) 195 WP_006639870.1 YfhD family protein -
  SK061_RS05100 (SK061_05100) - 1028154..1028267 (-) 114 WP_006639869.1 YfhE family protein -
  SK061_RS05105 (SK061_05105) - 1028333..1028872 (-) 540 WP_006639868.1 GNAT family N-acetyltransferase -
  SK061_RS05110 (SK061_05110) - 1029124..1030023 (-) 900 WP_006639867.1 TIGR01777 family oxidoreductase -
  SK061_RS05115 (SK061_05115) recX 1030093..1030884 (+) 792 WP_006639866.1 recombination regulator RecX Regulator
  SK061_RS05120 (SK061_05120) - 1030889..1031203 (+) 315 WP_006639865.1 YfhH family protein -
  SK061_RS05125 (SK061_05125) - 1031234..1031404 (-) 171 WP_006639864.1 YpzG family protein -
  SK061_RS05130 (SK061_05130) - 1031430..1031579 (-) 150 WP_006639863.1 small, acid-soluble spore protein K -
  SK061_RS05135 (SK061_05135) - 1031710..1031979 (+) 270 WP_006639862.1 YfhJ family protein -
  SK061_RS05140 (SK061_05140) - 1032018..1033127 (+) 1110 WP_006639861.1 FAD-binding oxidoreductase -
  SK061_RS05145 (SK061_05145) - 1033343..1034302 (+) 960 WP_006639860.1 glycosyltransferase family 2 protein -
  SK061_RS05150 (SK061_05150) - 1034271..1034672 (+) 402 WP_006639859.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30450.79 Da        Isoelectric Point: 8.8404

>NTDB_id=907707 SK061_RS05115 WP_006639866.1 1030093..1030884(+) (recX) [Bacillus sonorensis strain PMC204]
MPYITKISAQKNNKDRVNIFLDEKYAFSVDMDVLVKFDLRKGKLLDELDVIEIQYGDDIKKGFNKALDYLSYRMRSTKEV
KDHLKKKGAADSAVTEIIHMLKSHKYLDDREFAAAYVSTHRKTSGKGPDVLYKELQLKGIDEDLIQEALRSFTFSEQVAA
AVKHAEKLLKKGKKLSSRETKQAIEQQLIRKGFSFEAISAALLEIDYENDDDSEREALDKQGEKAMRRYHYDGSYETKMK
VKQFLFRKGFSLDMIDQYLDEKG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=907707 SK061_RS05115 WP_006639866.1 1030093..1030884(+) (recX) [Bacillus sonorensis strain PMC204]
ATGCCGTATATCACTAAAATTTCCGCCCAGAAAAACAATAAAGACCGGGTCAATATTTTTCTGGACGAAAAATACGCGTT
CAGCGTCGATATGGATGTTCTCGTCAAGTTCGATCTGCGAAAAGGAAAACTGCTTGATGAGCTTGACGTCATCGAAATCC
AGTATGGCGATGATATTAAAAAGGGCTTTAACAAAGCGCTCGATTATCTGTCATACAGGATGCGCTCGACAAAAGAAGTC
AAAGACCATCTCAAGAAAAAAGGCGCCGCAGATTCTGCGGTGACAGAAATCATCCATATGCTAAAAAGCCATAAATATTT
GGACGATCGGGAATTTGCGGCCGCTTATGTGAGCACCCACCGCAAAACGAGCGGCAAAGGCCCGGACGTCCTATACAAGG
AGCTTCAATTAAAAGGAATCGATGAAGACCTGATTCAGGAAGCATTGCGTTCATTTACATTTTCCGAGCAGGTTGCAGCC
GCTGTAAAGCACGCCGAAAAACTGCTCAAAAAAGGAAAAAAGCTATCCTCAAGAGAGACAAAACAAGCGATCGAACAGCA
GCTCATCCGGAAGGGATTTTCCTTTGAAGCGATCAGTGCGGCTCTTTTGGAAATCGATTATGAAAATGATGACGATTCGG
AAAGAGAAGCGCTGGACAAGCAGGGAGAAAAAGCGATGAGGCGCTATCATTACGACGGTTCTTATGAAACGAAAATGAAG
GTCAAACAGTTTTTGTTCAGAAAAGGATTTTCGCTTGATATGATCGATCAATATCTAGATGAAAAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

68.702

99.62

0.684