Detailed information NTG0907705

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABMY60_RS16595
• Genome accession: NZ_CP158147
• Coordinates: 3346270..3347262 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDN-24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3341270..3352262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABMY60_RS16575 (ABMY60_16575)	otnK	3342046..3343212 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ABMY60_RS16580 (ABMY60_16580)	ygbL	3343304..3343942 (+)	639	WP_001278994.1	aldolase	-
ABMY60_RS16585 (ABMY60_16585)	ygbM	3343947..3344723 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABMY60_RS16590 (ABMY60_16590)	ygbN	3344812..3346176 (+)	1365	WP_000104441.1	GntP family transporter	-
ABMY60_RS16595 (ABMY60_16595)	rpoS	3346270..3347262 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABMY60_RS16600 (ABMY60_16600)	nlpD	3347325..3348419 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABMY60_RS16605 (ABMY60_16605)	pcm	3348604..3349230 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABMY60_RS16610 (ABMY60_16610)	surE	3349224..3349985 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABMY60_RS16615 (ABMY60_16615)	truD	3349966..3351015 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABMY60_RS16620 (ABMY60_16620)	ispF	3351012..3351491 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABMY60_RS16625 (ABMY60_16625)	ispD	3351491..3352201 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=907705 ABMY60_RS16595 WP_000081550.1 3346270..3347262(-) (rpoS) [Escherichia coli strain FDN-24]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=907705 ABMY60_RS16595 WP_000081550.1 3346270..3347262(-) (rpoS) [Escherichia coli strain FDN-24]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715