Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SK061_RS02595 Genome accession   NZ_CP139190
Coordinates   522650..523600 (+) Length   316 a.a.
NCBI ID   WP_006638684.1    Uniprot ID   M5P3I9
Organism   Bacillus sonorensis strain PMC204     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517650..528600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS02580 (SK061_02580) - 517725..519149 (+) 1425 WP_006638681.1 HAMP domain-containing sensor histidine kinase -
  SK061_RS25005 - 519190..520143 (-) 954 WP_373870239.1 methyl-accepting chemotaxis protein -
  SK061_RS25010 - 520144..520926 (-) 783 Protein_478 MCP four helix bundle domain-containing protein -
  SK061_RS02590 (SK061_02590) - 521042..522403 (-) 1362 WP_006638683.1 aspartate kinase -
  SK061_RS02595 (SK061_02595) ceuB 522650..523600 (+) 951 WP_006638684.1 ABC transporter permease Machinery gene
  SK061_RS02600 (SK061_02600) - 523593..524534 (+) 942 WP_006638685.1 iron chelate uptake ABC transporter family permease subunit -
  SK061_RS02605 (SK061_02605) - 524534..525292 (+) 759 WP_006638686.1 ABC transporter ATP-binding protein -
  SK061_RS02610 (SK061_02610) - 525313..526251 (+) 939 WP_029418940.1 siderophore ABC transporter substrate-binding protein -
  SK061_RS02615 (SK061_02615) - 526332..527747 (-) 1416 WP_006638688.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35107.43 Da        Isoelectric Point: 10.1428

>NTDB_id=907705 SK061_RS02595 WP_006638684.1 522650..523600(+) (ceuB) [Bacillus sonorensis strain PMC204]
MKLRYLLLLLIILSFSSIFIGVKQLSPLDLFRFNEDAVKTLYISRFPRMISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGIIISILLFSSAGIFVKMLFAFAFSLFGSFLFIKILDRIRFKDAVFIPLVGLMLGGVVSAISTFMAYQYDLI
QNVNAWFEGDFSLIMKGRYELLYVSIPLVIIAYLFANKFTVAGMGESFSVNLGLNYKRVINTGLIIVSVISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLLCDILGRIIIYPYEISVGLMVGIIGSGIFLYLLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=907705 SK061_RS02595 WP_006638684.1 522650..523600(+) (ceuB) [Bacillus sonorensis strain PMC204]
ATGAAATTACGATACTTACTGCTTCTGCTCATCATTCTTTCTTTCAGTTCCATTTTCATCGGCGTCAAACAGCTGTCGCC
TCTGGATCTATTCAGGTTCAATGAGGATGCCGTAAAAACGCTGTACATAAGCCGGTTTCCGCGCATGATCAGCATCGTGC
TCGCGGGCATGAGCCTCAGCATCTGCGGACTGATCATGCAGCAGCTGACGCGCAATAAATTCGTTTCGCCGACGACGGCC
GGAACGATGGACTGGGCCAGGCTCGGCATTATCATCTCGATTTTGCTTTTTTCTTCGGCGGGTATTTTTGTGAAAATGCT
GTTTGCCTTTGCTTTTTCACTGTTTGGCAGCTTTCTGTTCATTAAGATTTTGGACAGGATCAGGTTTAAGGACGCCGTGT
TTATTCCGCTTGTCGGATTGATGCTTGGCGGCGTCGTCAGCGCCATATCTACGTTCATGGCTTATCAGTATGACCTCATT
CAAAATGTCAATGCGTGGTTTGAGGGGGATTTTTCACTGATCATGAAAGGGAGGTATGAGCTTTTATACGTGAGCATCCC
GCTCGTTATTATCGCCTATCTGTTTGCCAATAAGTTTACGGTGGCCGGAATGGGTGAGAGCTTCTCCGTCAATTTGGGGC
TCAATTACAAGCGGGTGATCAACACCGGCCTGATCATTGTATCGGTCATCTCATCGGTCGTAATTTTGACGGTCGGCACG
CTTCCTTTTCTAGGGCTGATCATTCCAAACATTGTCTCGATTTATCGCGGGGACCATTTGAAAAACAGCCTGCCTCACAC
GGCGGTTCTCGGCGCCGTCTTTGTCCTGCTGTGTGATATATTGGGCCGGATCATCATTTATCCGTATGAAATTTCGGTCG
GGCTGATGGTCGGCATCATCGGAAGCGGCATTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P3I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

100

0.509