Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SK061_RS00265 Genome accession   NZ_CP139190
Coordinates   49215..49508 (-) Length   97 a.a.
NCBI ID   WP_087962552.1    Uniprot ID   -
Organism   Bacillus sonorensis strain PMC204     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 44215..54508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS00225 (SK061_00225) - 44225..44554 (+) 330 WP_029418760.1 cyclic-di-AMP receptor -
  SK061_RS00230 (SK061_00230) - 44566..45006 (+) 441 WP_006640372.1 YaaR family protein -
  SK061_RS00235 (SK061_00235) holB 45018..46007 (+) 990 WP_006640373.1 DNA polymerase III subunit delta' -
  SK061_RS00240 (SK061_00240) - 46010..46837 (+) 828 WP_006640374.1 stage 0 sporulation family protein -
  SK061_RS00245 (SK061_00245) yabA 46852..47214 (+) 363 WP_006640375.1 DNA replication initiation control protein YabA -
  SK061_RS00250 (SK061_00250) - 47295..48038 (+) 744 WP_006640376.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SK061_RS00255 (SK061_00255) - 48025..48318 (+) 294 WP_006640377.1 GIY-YIG nuclease family protein -
  SK061_RS00260 (SK061_00260) rsmI 48293..49168 (+) 876 WP_006640378.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SK061_RS00265 (SK061_00265) abrB 49215..49508 (-) 294 WP_087962552.1 transition state genes transcriptional regulator AbrB Regulator
  SK061_RS00270 (SK061_00270) metG 50012..52000 (+) 1989 WP_006640380.1 methionine--tRNA ligase -
  SK061_RS00275 (SK061_00275) - 52087..52854 (+) 768 WP_006640381.1 TatD family hydrolase -
  SK061_RS00280 (SK061_00280) - 53101..54300 (+) 1200 WP_006640382.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10779.57 Da        Isoelectric Point: 5.1848

>NTDB_id=907702 SK061_RS00265 WP_087962552.1 49215..49508(-) (abrB) [Bacillus sonorensis strain PMC204]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSLKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=907702 SK061_RS00265 WP_087962552.1 49215..49508(-) (abrB) [Bacillus sonorensis strain PMC204]
ATGAATATGAAATCTACAGGTATCGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
ACTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTGGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAGGTTTCTGATGATAACCTGAAACTTGCTGGCGGTAAACTTGTTCTCAGCCCAGAAGGC
GCTGAACAAATCATCAACGAAATTCAAGCTCAGCTTCAATCTCTAAAAAATTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

98.969

0.938