Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   TM2_RS11575 Genome accession   NZ_AP025262
Coordinates   2256874..2257644 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2251874..2262644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS11555 (TM2_22430) - 2251967..2252788 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  TM2_RS11560 (TM2_22440) - 2252814..2253452 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  TM2_RS11565 (TM2_22450) glyS 2253619..2255664 (-) 2046 WP_146271086.1 glycine--tRNA ligase subunit beta -
  TM2_RS11570 (TM2_22460) glyQ 2255657..2256544 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  TM2_RS11575 (TM2_22470) recO 2256874..2257644 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  TM2_RS11580 (TM2_22480) - 2257680..2257823 (-) 144 WP_008342408.1 YqzL family protein -
  TM2_RS11585 (TM2_22490) era 2257971..2258876 (-) 906 WP_007501305.1 GTPase Era -
  TM2_RS11590 (TM2_22500) - 2258869..2259267 (-) 399 WP_008342410.1 cytidine deaminase -
  TM2_RS11595 (TM2_22510) - 2259380..2259766 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  TM2_RS11600 (TM2_22520) ybeY 2259744..2260223 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  TM2_RS11605 (TM2_22530) - 2260224..2262338 (-) 2115 WP_407969087.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=90770 TM2_RS11575 WP_007501304.1 2256874..2257644(-) (recO) [Bacillus altitudinis strain TM2]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=90770 TM2_RS11575 WP_007501304.1 2256874..2257644(-) (recO) [Bacillus altitudinis strain TM2]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment